BtaEX6053688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58190114-58193337:+
Coord C1 exon
chr10:58190114-58190270
Coord A exon
chr10:58192409-58192552
Coord C2 exon
chr10:58193256-58193337
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGCTATGTTTTGTAGGCT
3' ss Score
6.45
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAACAATAAAAACCAGTCAATAATTGTAAGTGGGGAGTCGGGTGCTGGAAAGACAGTGTCTGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAGTCCAGCAGTAACACTCACGTGGAAGACAAGGTCCTCGCATCAAACCCCATAACCGAG
Seq A exon
GCTGTTGGAAATGCCAAGACCACCCGCAATGACAACAGCAGTCGGTTTGGGAAATACACGGAAATTAGTTTTGATGAGAGAAATCAAATTATAGGAGCGAACATGAGAACTTACCTGCTAGAGAAATCCAGAGTTGTCTTTCAA
Seq C2 exon
TCAGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCCGCAGAGCAGTCGGAATTTAAACATCTTAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.312 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAGTCAATAATTGTAAGTGGGG
R:
TTTAAGATGTTTAAATTCCGACTGCT
Band lengths:
226-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]