HsaEX6079160 @ hg19
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Coordinates
chr20:61951643-61953463:+
Coord C1 exon
chr20:61951643-61951720
Coord A exon
chr20:61952365-61952451
Coord C2 exon
chr20:61953410-61953463
Length
87 bp
Sequences
Splice sites
3' ss Seq
CAGGGTCTCTCTTCTTCCAGAGG
3' ss Score
8.37
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TTTCAGCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCCTCG
Seq A exon
AGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAGGACCTCAAGGACCCCCA
Seq C2 exon
GGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'25-32,'25-30,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.517 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(6.6=30.8)
A:
PF0139113=Collagen=PU(18.6=37.9)
C2:
PF0139113=Collagen=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGCTCCAGATGCTGCAG
R:
TGGGAAGCCCTGCTCTCC
Band lengths:
123-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)