GgaEX6023133 @ galGal3
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
NA
Coordinates
chr20:8847415-8850059:+
Coord C1 exon
chr20:8847415-8847492
Coord A exon
chr20:8847881-8847967
Coord C2 exon
chr20:8850006-8850059
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTGTTGTTTTTTCAGAGG
3' ss Score
9.18
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
TTCCAGCTGCAGTCATTGCAGGTTGTGTGCAACAGCTTAGGGGCGGAGGAGGACCGATGCTGTGATCTTCCTGCATTG
Seq A exon
AGGGATGAGGAGAGCTGCCCCACCATAGCTCCTGCCTGCTCCTGCACTTCTGGCCGCCCGGGCTTGCCAGGTCCTCCAGGTCCCCCT
Seq C2 exon
GGCAGCCCTGGGAGGAGAGGACCACAAGGCGAGCAGGGGGAGCCGGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.517 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(20.0=41.4)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCATTGCAGGTTGTGTGC
R:
CTCCCCCTGCTCGCCTTG
Band lengths:
111-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]