HsaEX6092272 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6478794-6479729:-
Coord C1 exon
chr19:6479680-6479729
Coord A exon
chr19:6478948-6479067
Coord C2 exon
chr19:6478794-6478863
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACAGCCCTTCCCACTCCAGGGA
3' ss Score
8.3
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GAAGCTATGCAGATGGTGCCTAAATTCTGCTTCCCTTTTGATGTGGAAAG
Seq A exon
GGAGCCCCCCAGCCCCGCCGTGCAGCATTTCACCTTCGCCCTCACAGACCTTGCCGGCAACCGCAGATTTGGTTTCTGCCGCCTGCGGGCGGGTACCCAGAGCTGTCTCTGCATCCTCAG
Seq C2 exon
CCACCTGCCTTGGTTCGAGGTGTTTTACAAGCTATTGAACACAGTGGGAGACCTCCTAGCCCAGGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(31.8=93.3)
A:
PF0345613=uDENN=PD(65.9=70.7),PF0214116=DENN=PU(13.2=22.0)
C2:
PF0214116=DENN=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCTAAATTCTGCTTCCC
R:
GGAGGTCTCCCACTGTGTTCA
Band lengths:
93-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)