BtaEX0011034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19221639-19222872:+
Coord C1 exon
chr7:19221639-19221682
Coord A exon
chr7:19222601-19222720
Coord C2 exon
chr7:19222803-19222872
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGAGCCTTTCCTGCTCCCAGGGA
3' ss Score
6.58
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ATCCCCCCATCCTGCGGCAGTTCCCCCCAGACTTCCAGGACCAG
Seq A exon
GGAGACCCCCAGCACCGCTGTACAGCATTTCACCTTCGTGCTCACAGATCTGACCGGCACCCGCAGGTTTGGTTTCTGCCGCCTGCGGGCTGGTGCTCTCAGCTGTCTCTGTATCCTCAG
Seq C2 exon
CCACCTGCCTTGGTTTGAGGTGTTCTACAAGCTGCTGAACACAGTGGGGGACCTCCTGGCTCAAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
C2:
PF0214116=DENN=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGCGGCAGTTCCC
R:
TTGGTCTTGAGCCAGGAGGTC
Band lengths:
107-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development