MmuEX6078696 @ mm10
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57074493-57076696:-
Coord C1 exon
chr17:57076647-57076696
Coord A exon
chr17:57075369-57075488
Coord C2 exon
chr17:57074493-57074562
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGGAGTCTTTTCCCCTCCAGGGA
3' ss Score
8.99
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAGCCATGCAGATGGTGCCCAGGTTCTGTTTCCCCTTCGACATAGAAAG
Seq A exon
GGAGCCACCCAGCCCTGCTGTTCAGCATTTCACCTTTGCCCTCACTGACCTGGTGGGCAACCGTAGATTTGGCTTCTGCCGCCTGCGAGCTGGTGCACGGAGTTGTCTCTGTATCCTCAG
Seq C2 exon
CCACTTTCCCTGGTTTGAAGTGTTCTACAAGATTCTCAATAACGTGGGGGACCTTCTAGCCCAGAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'6-10,'6-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(26.2=100)
A:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(4.4=22.0)
C2:
PF0214116=DENN=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGCCCAGGTTCTGTTTC
R:
TGGTTCTGGGCTAGAAGGTCC
Band lengths:
107-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types