RnoEX0027135 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9971887-9974161:+
Coord C1 exon
chr9:9971887-9971936
Coord A exon
chr9:9973118-9973237
Coord C2 exon
chr9:9974092-9974161
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCAGAGTCTTTTACCCCCAGGGA
3' ss Score
5.63
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGGCCATGCAGATGGTGCCCAGGTTCTGTTTCCCCTTCGACATAGAAAG
Seq A exon
GGAGCCGCCCAGCCCTGCTGTCCAGCACTTTACCTTTGCCCTCACTGACCTGGTGGGCAACCGTAGATTTGGCTTCTGCCGCCTGCGAGCCGGTGCATGGAGCTGCCTCTGTATACTCAG
Seq C2 exon
CCACCTTCCCTGGTTTGAAGTGTTCTACAAGATTCTCAATACTGTGGGGGACCTCCTAGCTCAGAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'6-11,'6-10,7-11
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(26.2=100)
A:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
C2:
PF0214116=DENN=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGCCCAGGTTCTGTTTC
R:
GGTTCTGAGCTAGGAGGTCCC
Band lengths:
106-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]