HsaEX6092272 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6478783-6479718:-
Coord C1 exon
chr19:6479669-6479718
Coord A exon
chr19:6478937-6479009
Coord C2 exon
chr19:6478783-6478852
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTCACCTTCGCCCTCACAGACC
3' ss Score
10.71
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GAAGCTATGCAGATGGTGCCTAAATTCTGCTTCCCTTTTGATGTGGAAAG
Seq A exon
ACCTTGCCGGCAACCGCAGATTTGGTTTCTGCCGCCTGCGGGCGGGTACCCAGAGCTGTCTCTGCATCCTCAG
Seq C2 exon
CCACCTGCCTTGGTTCGAGGTGTTTTACAAGCTATTGAACACAGTGGGAGACCTCCTAGCCCAGGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'6-16,'6-15,7-16
Average complexity
S*
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(31.8=93.3)
A:
PF0345613=uDENN=PD(65.9=70.7),PF0214116=DENN=PU(20.9=22.0)
C2:
PF0214116=DENN=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCCTAAATTCTGCTTCC
R:
GGAGGTCTCCCACTGTGTTCA
Band lengths:
95-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains