HsaEX6092283 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6467219-6468656:-
Coord C1 exon
chr19:6468589-6468656
Coord A exon
chr19:6468245-6468452
Coord C2 exon
chr19:6467219-6468129
Length
208 bp
Sequences
Splice sites
3' ss Seq
GGCTGCCCATCCTCACCCAGGAC
3' ss Score
7.29
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AACCGGCCCCTTCGCCCCAGCAGGAGACGCCAGCTGGAAGAGGGAACTTCCGAGCCCCCAGGGGCGGG
Seq A exon
GACACCCCCACTGAGCCCTGAGGATGAGGGGTGCCCGTGGGCAGAAGAAGCTCTGGACAGCAGCTTCTTGGGGTCTGGAGAAGAACTGGATTTGTTGAGCGAGATTCTGGACAGTCTTAGCATGGGAGCCAAGAGCGCAGGCAGCCTGAGACCGAGCCAGAGTTTAGACTGCTGTCACAGAGGAGACCTGGACAGCTGCTTCAGCCTG
Seq C2 exon
CCCAACATACCAAGATGGCAACCAGACGATAAGAAACTACCAGAGCCGGAGCCCCAGCCCCTTTCCCTGCCATCCCTGCAAAATGCCTCGTCTTTGGATGCCACCAGCTCTTCAAAGGACTCCAGGTCCCAGCTGATACCCTCAGAGTCCGACCAAGAAGTCACGTCTCCATCCCAGTCCTCAACAGCTTCTGCAGACCCAAGCATCTGGGGGGACCCCAAACCCTCTCCTCTCACAGAGCCCCTAATTCTTCATCTCACCCCTTCCCACAAGGCAGCTGAAGATTCTACAGCCCAGGAAAACCCCACTCCCTGGCTCTCCACTGCACCCACTGAGCCCAGCCCTCCAGAAAGCCCCCAAATTCTGGCCCCCACAAAGCCCAACTTTGATATAGCCTGGACGTCCCAGCCCCTTGATCCTTCCTCAGACCCCAGTTCTCTGGAGGACCCCAGAGCCCGGCCTCCCAAAGCCCTGCTGGCAGAGCGCGCTCACCTCCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.600 C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGAAGAGGGAACTTC
R:
TGGGAAGGGGTGAGATGAAGA
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)