RnoEX0027134 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9981285-9981845:+
Coord C1 exon
chr9:9981285-9981352
Coord A exon
chr9:9981437-9981644
Coord C2 exon
chr9:9981729-9981845
Length
208 bp
Sequences
Splice sites
3' ss Seq
GATGTCAACCCTCAATCCAGGAG
3' ss Score
4.85
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AACAGGCCCCTCCGTCCTAGCAGGAGACTCAAGCCGGAAGGGGGACCTTCTGAACCCCTGCAGGAGAG
Seq A exon
GAGCCCCACCTTGAACTCCAGGGACACTCAGAATCCCTGGGCAGAGGACACTCTAGACGGCAGCTTCCTGGGGTCTGGAGAGGAGCTGGATCTGCTGAGTGAGATCCTAGACAGTCTGAGTGTGGAAATCAAGAGTGGCGGCCAGCTGAGGGCCAGCCAGAGTCTGGACTGCTGTCAGCAAGGGGCCTCAGAGAGCTGTTCCAGCCTG
Seq C2 exon
CCTGACATCCCAGTAGGGTCACCATGGCAACTGGAAGAAGACAGAAGATCCCAGGATCCTCAGCTTCAGTCCCTGCCTGGTGACCTATCACCGCTGCAGGACACCCCATTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'31-46,'31-43,32-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.743 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCCTCCGTCCTAG
R:
TGAAAATGGGGTGTCCTGCAG
Band lengths:
180-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]