BtaEX6038693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19228798-19229937:+
Coord C1 exon
chr7:19228798-19228877
Coord A exon
chr7:19229025-19229232
Coord C2 exon
chr7:19229344-19229937
Length
208 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCCATCCTCACCCAGGAC
3' ss Score
7.42
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AATCGGCCCCTTCGCCCTAGGAGTCGCCCCAGCAGGAGACTTAGGCTGGAAGAGAAACCTTCTGAGTCCCTGGAAGAGAG
Seq A exon
GACACCCTCCCTGAGCCCAGAGGATGCTCAGGACCCGTGGGCAGAGGAAGCGCTGGATGGCAGCTTCCTGGGGTCTGGAGAAGAACTGGATTTGCTAAGTGAGATATTGGATAGCCTGAGCACGAGAGCCACGCGGACTGGTAGCCTGCGGCCCAGCCAGAGTTTAGACTGCTGCCACAGAGAGGACTTGGACAGCTGCCTCAGCCTG
Seq C2 exon
CCTGACATACCGGGAAGATCGAGTTGGCAAGCGGATGATGACAAACCGCCAGAGCCCCAGCACCTGTCCTTGCTGCCTCTGCACACCCCTCAGCCTTTGGGTGCCACAAGCTCCAGGAAGCACCCCACTTGCCAACTGCCCTCAGAGACTGGCCCAGAAATTGAGTCTCCATCCCAGTCTTTGACAGCTTCTGCAGACCCCAGCAGCAAAGGGGACCCTGGATCCTCTCCCACAGAGCCCCAGCCTCCCCACTTCTCCCCTCCCCATGAAGCAACTGAAGATCCCACAGCCCAGGAGGACCCCTGCTCCCAGCTCTTGGCAGCACCCAGCCAGCCCAGCCCTCCAGAAAGCCCCCGACCTGAGCCCAACTTGGGTGTTACCTGGACATCCCAAGCCCTTGATTCTGTCTCGGATCCGGGTTCCTCAGAGAACCCCGGAGCCTCACCTTCAGAGGGCCTGCTCGCAGTTCACCTCCAGCCCCTCGAGGAGCCAGAAGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'23-27,'23-23,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.786 C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGAGTCCCTGGAAGA
R:
CTTCATGGGGAGGGGAGAAGT
Band lengths:
295-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]