DreEX0003549 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55518798-55523112:-
Coord C1 exon
chr1:55523030-55523112
Coord A exon
chr1:55521766-55521979
Coord C2 exon
chr1:55518798-55519780
Length
214 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGTCTCGGCCTGCAGCGC
3' ss Score
9.54
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
TCTCGTCCTCGACGGCCTGCACAGAAACACCATCGGCAAAAAGAGCAAAAGACACCAGTTAACAACACCACCTATGAGGACAG
Seq A exon
CGCAGCAGATGCTGTAGATCAGTGTTCTGGCAGCAGTGACGTACAGGAGGAGGAGGAGGAGGATTTCTCTCTGCTGGCCGATGCGGAGGAGATGGACCTGCTGGGCGAGATCTTCGACACCCTGAGCGCTCAGAGCTCCAGAGAGCCGGGTTTACTGTACGGCACACGCAGCCTCGACCTCTTCCGCTCCGACAGCAGCGAATTCATCTCGCAT
Seq C2 exon
AAGGGATTAGCAAACCCAAGCCAGGAGAGCCTGAGTCCGTCTTTTGCAAACAGCGGAAGCCTGATGAGTTGGGAGGAGGAGTTAGAGGAGGGGCCTGATGGTGAGGGGGAGGGGCCTGGTGGTGGTGAGGAGGAGGGGACTGTCAATGAGGAGAAGGGGACTTTCAATGAGGAGGAGGAGTCTATCATAATGATTGACGGATCAGAAAATGAGCTTAATGAGTTAGAGAAGGACTTGACAGAGTTGGGGGAAACACTGCGCTCTGATCTACAAGATCTAGAAGACGCTTCTGTGGAGAGCTCTCAAGAAGTGCAAGAAAACACACAAGATTACACACAAATGAACGGTACAATGGAGGAAAGCCTGGATACGGAAACAATAGCTGAAGAAAGGACTGAGACGCAAACTGACAAAGAAGAGGAAGAGCTTCAAAACGAGACACCTGATGCATCAAATGGACACACGCATGAAGAAAGCATCTCTCTCAAAGTAAAGATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'24-28,'24-26,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.679 C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATCGGCAAAAAGAGCA
R:
TCCCCCAACTCTGTCAAGTCC
Band lengths:
308-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]