GgaEX6015596 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9023946-9034178:-
Coord C1 exon
chr17:9034090-9034178
Coord A exon
chr17:9025060-9025315
Coord C2 exon
chr17:9023946-9024407
Length
256 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCCTGTCTTGCAGGCC
3' ss Score
12.14
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
Seq A exon
GCCGCAGCCATACCGGGCTCTGAAAGAATCTGATAGTGCTGATGGAGAAGAGGCTGTCAGTCCAGAAAAGGCAAAAGAGCCTCTGCCTCCAAGCCCTCTTCTCTTGAGCAACGCCACAGAAATCAACCTCCTTGAAGACATTTTCCCTAACTTAGAAGTAGAAACACAGCCTCAGCCTCTCAGCCAGGCTAAAAGCCTGGAAGACCTGCGGACTCCAAAAGAAGAGACAGATCAGCGATGCACGTTTGATTACCAG
Seq C2 exon
AGAATGGATCTTGCTGGGTCTGAGAGGAACAGGATTGTGCCACCAATGAAGCTGTCTCACCCTTACAACAAGCTGTGGAATATGGGTCATGATGATATGGCTATTCCTACCAAGTACTCACAAAGCTCTCCAGAAAGGCCTCTGACTGCACTTGGTAATGTACCGCCAATCACAAGGAGACCCCGGAGCAGAGACAGCATTCTGGCTCCTGCAGAAAAGGATGACTCAAATCCTACTGCTCAAGGAAACATCACCATTCCTAGGCCACAGGGAAGAAAGACTCCTGAACTGGGGATAGTGCCACCACCGCCAGCACCCAGGGCTTCCAAGCATCAGACACCAACTGGGCCAACAGAAATTCTCAGCACTCACACTACAGGATGTAGCCAGTTGGTTTCAGATCTTATCCCAGAGCCCTTAGGAGTTGCTAGGTTGTCCTTAGAACCTGAAGGCCAGCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'47-67,'47-66,51-67=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.898 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGTCCTCCAAGACCTCAT
R:
CAGAATGCTGTCTCTGCTCCG
Band lengths:
293-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]