HsaEX6062949 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123379654-123387858:-
Coord C1 exon
chr9:123387730-123387858
Coord A exon
chr9:123383655-123383913
Coord C2 exon
chr9:123379654-123382625
Length
259 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTCTGTCCCCGACAGGCC
3' ss Score
10.24
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCTGGTAAAGCCCTTGCGACACTATGCGGTCTTCCTCTCCGAAGACTCCTCTGATGATGAATGCCAGCGGGAAGAGGGCCCGAGCTCTGGCTTCACCGAGAGCTTTTTCTTCTCCGCTCCCTTTGAATG
Seq A exon
GCCGCAGCCGTATCGGACACTCAGGGAGTCAGACAGCGCGGAAGGCGACGAGGCAGAGAGTCCAGAGCAGCAAGTGCGGAAGTCCACAGGCCCTGTCCCAGCTCCCCCTGACCGGGCTGCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAACCTGGACATGGAGGCCGCACTGCAGCCACTGGGCCAGGCCAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCTGAGGGAGCAGCCAGGGACCTTTGACTATCAG
Seq C2 exon
AGGCTGGATCTGGGCGGGAGTGAGAGGAGCCGCGGGGTGACAGTGGCCTTGAAGCTTACCCACCCGTACAACAAGCTCTGGAGCCTGGGCCAGGACGACATGGCCATCCCCAGCAAGCCCCCAGCTGCCTCCCCTGAGAAGCCCTCAGCCCTGCTCGGAAACTCCCTGGCCCTGCCTCGAAGGCCCCAGAACCGGGACAGCATCCTGAACCCCAGTGACAAGGAGGAGGTGCCCACCCCTACTCTGGGCAGCATCACCATCCCCCGGCCCCAAGGCAGGAAGACCCCAGAGCTGGGCATCGTGCCTCCACCGCCCATTCCCCGCCCGGCCAAGCTCCAGGCTGCCGGCGCCGCACTTGGTGACGTCTCAGAGCGGCTGCAGACGGATCGGGACAGGCGAGCTGCCCTGAGTCCAGGGCTCCTGCCTGGTGTTGTCCCCCAAGGCCCCACTGAACTGCTCCAGCCGCTCAGCCCTGGCCCCGGGGCTGCAGGCACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'103-105,'103-104,105-105=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.812 C2=0.884
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTTCACCGAGAGCTTTT
R:
ATGGTGATGCTGCCCAGAGTA
Band lengths:
303-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains