BtaEX6046066 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94526960-94547188:-
Coord C1 exon
chr11:94547100-94547188
Coord A exon
chr11:94529998-94530253
Coord C2 exon
chr11:94526960-94528756
Length
256 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCTGCCTCCCCCCAGGCC
3' ss Score
12.75
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGCGCCCTCCCCGTCCACACGTCGTTAAAAGACCGAAGAGCAACATCACAGTGGAAGCCCGAAGGACGTCCGTCTCGAGCCCCGACCA
Seq A exon
GCCACAGCCATATCGGACACTCAAGGAGTCAGACAGTGCAGGGGACGAGGCCGAAAGCCCGGAGCAGCGAGCGCGGGAGCCTGTGGGCCCCACCCCAGCTCCACACGACCGGGCCGCCAGCATCAACCTCCTGGAGGATGTCTTCAGCAACCTCGACATGGAAGTCCCGCTGCAGCAGCTGGGCCAGGCCAAAAGCTTGGAAGACCTTCGGACCCCCAAAGACCTGAGGGAGCAGCCGGGGACCTTTGACTATCAG
Seq C2 exon
AGGCTGGACCTGGGCAGAAGTGACAGGAGCCGTGGGACACCAGGGGCCTTGAAGCTCGCCCACCCGCACAGCAGGCTCTGGAGCCTAGGCCAGGATGACATGGCCATCCCCAGCAAGCCGCCCGCCGCCTGCCCCGAGAAGCCCTCAGCCCTGCTCGGGAACTCCCTGGCCTCACCCTGCAGGCCCCAGAACCAGAATGGCCTCCTGAACCCCAGCGACAAGGAGGAGGTGCCCACACCCACCCTGGGCAGCATCACTATCCCCCGGCCCCAGGGCAGGAAGACCCCAGAGCTGGGCATCGTGCCCCCGCCTCCTACTGCCCGCCCAGCCAAGCTCCAGGCCCCCGGCATCGCCCTTGGCGACTTCTTGGAACAACTGCCGGCTGAGCGGGAAAGGCGGGCTGCCCTCAGCTCAACCCCATTCCCTGGGCTCCTCTCCAGTGCTGCACCCCAAGACCCCACTGAACTGCTCCAGCCACTCAGCCTGGCCCCAGGGGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'54-71,'54-70,58-71=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.907 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACAGTGGAAGCCCGAAG
R:
GATAGTGATGCTGCCCAGGGT
Band lengths:
306-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]