RnoEX0027104 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22061126-22066682:-
Coord C1 exon
chr3:22066554-22066682
Coord A exon
chr3:22063588-22063846
Coord C2 exon
chr3:22061126-22063394
Length
259 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTGTTTCCTCCTAGGCC
3' ss Score
10.21
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CCTGGTAAAGCCCTTGCGACACTATGCTGTCTTCCTCTCTGAAGACTCCTCTGATGAGGAATGCCGACGGGACAAGCCTCCCAGCACTGGCTTCACTGAAAGCCTTTTCTTCTCTGCTCCCTTTGAATG
Seq A exon
GCCACAGCCATACAGGACTTTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCCAACTCGGGAGCCCTGGGGGCCTACCCCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGATGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTTCGGGTCCCCAGAGACTTGCGGGAACAGTCAGGCAGCTTTGATTACCAG
Seq C2 exon
AGGCTGGACCTATGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGTTTGCTCATCCATATACTCAGCTCTGGAGTCTCGGACAAGACGACATGGCCATCCCCAGCAAGCCCTCCATGACCTCCCCTGAGAAGCCCTCAGCTCTGCTTGGTACTTTGCCAGCACTGCCTGTCAGACCCCAGAACCAGGAGGGCATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCGTGCCAGCTCCAGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAGACCCCTGAGCTTGGCATTGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGGTGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTACAGATGGACCTGGAAAGACAAGCTGCTCTGAGTCCAGCCCTCTTGTCAGGGCTGCTCCCGAGAGCTGGTCCCCAAGGCTCCACAGAACTTGTGCAGTCACCCAGCCCAGCCCCAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX2-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.776 C2=0.813
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCTTCACTGAAAGCCT
R:
GAATGGTGATGCTGCCTGGAG
Band lengths:
307-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]