HsaEX6094931 @ hg38
Exon Skipping
Gene
ENSG00000130402 | ACTN4
Description
actinin alpha 4 [Source:HGNC Symbol;Acc:HGNC:166]
Coordinates
chr19:38675542-38701121:+
Coord C1 exon
chr19:38675542-38675642
Coord A exon
chr19:38700600-38700714
Coord C2 exon
chr19:38701002-38701121
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTCTGCTTCCCCAGACC
3' ss Score
9.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTTTTTAATAAGCCCAGAAATTTCTTTCAAGAGGGAGGATCTTTGTGAACATCTTGAGCCGCGTTCTTGATCGCTGGCTGTGGAAGCCTCCACCTATCAG
Seq A exon
ACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAG
Seq C2 exon
GGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATGTGAACAAAGCGCTGGACTTTATTGCCAGCAAAGGCGTCAAGCTGGTCTCCATCGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130402-'12-11,'12-10,26-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTTAATAAGCCCAGAAATTTCT
R:
CTTCTGCCCCGATGGAGACC
Band lengths:
221-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains