RnoEX0006370 @ rn6
Exon Skipping
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87103266-87104239:-
Coord C1 exon
chr1:87104139-87104239
Coord A exon
chr1:87103550-87103664
Coord C2 exon
chr1:87103266-87103385
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTCCTCTTCCCTAGACC
3' ss Score
11.87
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTACCTCAGCTCCAGTGAGCCTTGGTTTGTAGAATACTTTGCTCACTCAGTAGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
ACCTTCACAGCCTGGTGCAACTCCCATCTGCGGAAGGCTGGCACTCAGATCGAGAACATCGATGAGGATTTCCGGGATGGGCTCAAACTTATGCTTCTGCTGGAGGTCATTTCAG
Seq C2 exon
GGGAGCGGTTGCCTAAGCCAGAGCGGGGGAAGATGCGAGTGCACAAGATCAACAATGTAAACAAAGCCCTGGACTTCATCGCCAGCAAGGGAGTCAAGCTGGTGTCCATTGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433-'15-3,'15-0,16-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTGAGCCTTGGTTTGT
R:
CTTCTGCCCCAATGGACACC
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]