MmuEX0003635 @ mm10
Exon Skipping
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:28918672-28938151:-
Coord C1 exon
chr7:28938051-28938151
Coord A exon
chr7:28918954-28919068
Coord C2 exon
chr7:28918672-28918791
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTCCTCTTCCTTAGACC
3' ss Score
10.94
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAGGGTTTCTCTGTAGTCCTGGCTGTATTGGAATTTGCTTTGTAGACCAGGCTGGCCTTGAACTCAGGCCTATTTCTGTCTCCTGAGTGCTGGAATTAAAG
Seq A exon
ACCTTCACAGCCTGGTGCAACTCTCATCTTCGGAAGGCTGGCACTCAGATCGAGAATATCGATGAGGACTTCAGGGATGGGCTCAAACTTATGCTTCTGTTGGAGGTCATTTCAG
Seq C2 exon
GGGAGCGTTTGCCTAAGCCAGAGCGGGGGAAGATGCGAGTGCACAAGATCAACAATGTAAACAAAGCCCTGGACTTCATCGCCAGCAAGGGAGTCAAGCTGGTGTCCATCGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808-'8-8,'8-6,29-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0030726=CH=PU(11.4=88.9)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTCTCTGTAGTCCTGGC
R:
CTTCTGCCCCGATGGACAC
Band lengths:
219-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types