HsaEX6099523 @ hg19
Exon Skipping
Gene
ENSG00000092421 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:10738]
Coordinates
chr5:115837906-115872124:-
Coord C1 exon
chr5:115872079-115872124
Coord A exon
chr5:115840541-115840678
Coord C2 exon
chr5:115837906-115838023
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTACTTTTTGGCAGGGT
3' ss Score
7.52
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GACTCGGGCTCCCCAGGACAATGTCTCTTTCTTCACCAAGCTGATG
Seq A exon
GGTGAAGTAGAGAAATAAAGTCTCCCCGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACT
Seq C2 exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACACAGAGGCACAGGCTGGACATCCAGATGATTATGATCATGAACGGAACCCTCTACATTGCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-'3-6,'3-4,5-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(28.8=42.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGGCTCCCCAGGA
R:
AGCAGCAATGTAGAGGGTTCC
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)