HsaEX6099523 @ hg38
Exon Skipping
Gene
ENSG00000092421 | SEMA6A
Description
semaphorin 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr5:116502210-116574934:-
Coord C1 exon
chr5:116574185-116574934
Coord A exon
chr5:116504845-116504982
Coord C2 exon
chr5:116502210-116502327
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTACTTTTTGGCAGGGT
3' ss Score
7.52
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAGCGGCCAGCATCACCACACCCGCGGCACCGCGCTGCCGGCCGCAGAGCCGGGCCAGAGCCTTGCACCCCTGCCCCAGCCCCCACCCCGCCCCCCGCCCTGAAATGACTTGTTAATCGGCGCAGACACCACCAAGGGGACTCACCGAAGTGGAATCCAAGTGGAATTTGGATTTGGAGAAGAGTTTCTTGAACATTTACCCTCTTCCTTGTTGGTTTTCTTTTTCTTTTTCTTCTTTTTTTTTTTGGCTTCTTTTTTCCTCTCCCCTTCTCCGCTCGTCATTGGAGATGAACACATCGCGTTTGCATCCCAGAAAGTAGTCGCCGCGACTATTTCCCCCAAAGAGACAAGCACACATGTAGGAATGACAAAGGCTTGCGAAGGAGAGAGCGCAGCCCGCGGCCCGGAGAGATCCCCTCGATAATGGATTACTAAATGGGATACACGCTGTACCAGTTCGCTCCGAGCCCCGGCCGCCTGTCCGTCGATGCACCGAAAAG
Seq A exon
GGTGAAGTAGAGAAATAAAGTCTCCCCGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACT
Seq C2 exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACACAGAGGCACAGGCTGGACATCCAGATGATTATGATCATGAACGGAACCCTCTACATTGCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-'0-15,'0-12,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(28.8=42.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGCTTGCGAAGGAGAG
R:
GCAGCAATGTAGAGGGTTCCG
Band lengths:
248-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains