GgaEX1051700 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72384249-72439010:+
Coord C1 exon
chrZ:72384249-72385127
Coord A exon
chrZ:72436110-72436247
Coord C2 exon
chrZ:72438893-72439010
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTATTTTCCACAGTGT
3' ss Score
9.3
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TCCGCCTTCTTGCCGCGGCACGGCGAGCGCCGCCAGCCTCGGAGTTTTCCTGGAGCAGCCTTCGCACCGGGAGCACTTTTGGTAGAAGGGGAGCAGGACGAGACCCCGCAATGACTTACCTCCTGAGGCACGGCTGAAGGGGACTTACTGGAGTGGAATCGTAGTGGAATTTGGGTTTGGAGAGGAGTTGCGGACGCTGTTTTTCTTTTTTTCTTTTTTTCTTTTTCTTTTCTTTTTTTTTTTTTCGAGATTTTTTTTTTTCACTCCTGTTCCCTCTTTTTTTGCCCGTCATTGGAAATGAACAAATTGCACTTGCAATTCAGAAAGTAGAAATATTAAATACTCCATCCCCTGGGAAGCACATATGTAGTAATGACAAAGGATTGCAAAGGAGAGAGTGGCTCCAGTTTCCCAGAGAGATCCCCTTAAATGGATTACTAAATGGGACACACCATCAGCTAGTTCTGTCCTCTAGCTGCCCAGATAGATGCACCGAAAAG
Seq A exon
TGTGAAGTGAAGAAGTAAAGTCTCCCAGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCGATCAGTATTTCGCATGGCAACT
Seq C2 exon
ATACAAGACAGTATCCGGTGTTTGTGGGTCACAAGCCGGGACGGAACACCACGCAGAGGCACCGGCTGGACATCCAGCTGGTCACGGTCATGAACAGAACCCTCTACATTGCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'2-4,'2-3,11-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(3.9=42.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGGGAAGCACATATGT
R:
GTTCATGACCGTGACCAGCTG
Band lengths:
248-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]