HsaEX6100197 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139739787-139740952:+
Coord C1 exon
chr5:139739787-139740051
Coord A exon
chr5:139740397-139740557
Coord C2 exon
chr5:139740839-139740952
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTACCCACCTTCATCACAGGTG
3' ss Score
8.07
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGACTGTACTGGTTCTGAGATTCTGTGCAAGCCTCATGGAAATGAAGCTGCCAGGCCAGGAAGGGTTTGAAGCCTCCAGTGCTCCTAGAAATATTCCTTCAGGGGAGCTGGACAGCAACCCTGACCCTGGCACCGGCCCCAGCCCTGATGGCCCCTCAGACACAGAGAGCAAGGAACTGGGAGTACCCAAAGACCCTCTGCTCTTCATTCAGCTGAATGAGCTGCTGGGCTGGCCCCAGGCGCTGGAGTGGAGAGAGACAGGCAG
Seq A exon
GTGGGTACTGTTTGAGGAGAAGTTGGAGGTGGCTGCAGGCCGGTGGAGTGCCCCCCACGTGCCCACCCTGGCACTGCCCAGCCTCCAGAAGCTCCGCAGCCTGCTGGCCGAGGGCCTTGTACTGCTGGACTGCCCAGCTCAGAGCCTCCTGGAGCTCGTGG
Seq C2 exon
AGCAGGTGACCAGGGTGGAGTCGCTGAGCCCAGAGCTGAGAGGGCAGTTGCAGGCCTTGCTGCTGCAGAGACCCCAGCATTACAACCAGACCACAGGCACCAGGCCCTGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=0.005 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(48.0=85.5)
C2:
PF075658=Band_3_cyto=FE(38.8=100),PF075658=Band_3_cyto=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCAGGGGAGCTGGAC
R:
GTAATGCTGGGGTCTCTGCAG
Band lengths:
256-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)