MmuEX6001043 @ mm10
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36528157-36531216:+
Coord C1 exon
chr18:36528157-36528404
Coord A exon
chr18:36528643-36528803
Coord C2 exon
chr18:36531100-36531216
Length
161 bp
Sequences
Splice sites
3' ss Seq
CGCCTATTCCTTCATCACAGGTG
3' ss Score
8.82
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GCTCCCAGGATTTGTGCAAGTCTTTCCAGGATGAAGCTGCCAGGGCAGGGGGATTTTGAAAGCTCTGATGCTCATGAAAATGCTCACTCAGAGGAACCGGACAGTGGCCTAGGCCCTGGCCCTGGCCTTAATGGACCCTCAGGCATAGACATTGGGGAATCTCAGGTGTCTAAGGACCCTCTGCTCTTCATTCAACTAAATGAGCTGCTGGGTTGGCCCCAGGCACTAGAGTGGCGAGAGACAGGCAG
Seq A exon
GTGGCTGCTGTTCGAGGAAAAGCTAGACATGGGCGCGGGCCGGTGGAGTGCTCCCCATGTGCCTACCCTGGAACTCCCCAGCCTCCAGAAGCTTCGAAGTCTGTTGGCCGAGGGCATTGTCCTGCTAGACTGTCAGGCTCAGAGCCTCCTGGAGCTTGTGG
Seq C2 exon
ATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTCCCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAAAGGACAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485_MULTIEX1-1/16=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.073 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(49.5=85.5)
C2:
PF0095516=HCO3_cotransp=PU(1.3=15.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCAGAGGAACCGGACAG
R:
GTCCGTGATGGTGCTTGTCTT
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types