GgaEX6010925 @ galGal3
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1424473-1427398:+
Coord C1 exon
chr13:1424473-1424633
Coord A exon
chr13:1426915-1427075
Coord C2 exon
chr13:1427255-1427398
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCACTTCTCCCTGGGCAGGTG
3' ss Score
9.15
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
AGCCATAGCATCTTCTCATCGAGCATCTCCTCTGCAGCTGAGCGCATCAGTGCCATCCTGCCGCAGGAAGAGATGGGGGACCGAAAGTGCCCACTGCTGTTCGTCCAGCTCAATGAGCTGCTCAGCACTGCAGCAGGTCTGGCATGGAGAGAGACAGCTAG
Seq A exon
GTGGATTAAATTTGAAGAGAAGGTGGAAGATGGAGGGGAGCGCTGGAGCAAACCCCACATCCCAGCACTCCGCCTGCACAGCCTCTTTGAGCTGAGGACATGCCTGCAGAAGGGGACAGTGCTGCTGGATCTGAGTGCCCACAGTTTCAAGGAAATAATCG
Seq C2 exon
GAAAAGCACTCTCTGCGGAGCCTGAGGTATGGGAGCCCGAGCTGCGAGACTGCCTGTCAGCTTTGCTGCTCCGTCAGCCACTGCACCGAACTACCATGGCCCCGCTGCGTGTGCTCACAGAGCTCAGCCTTGCTCCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.8=85.5)
C2:
PF075658=Band_3_cyto=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGAGCATCTCCTCTGCA
R:
CATGGTAGTTCGGTGCAGTGG
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]