GgaEX6010925 @ galGal4
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:972820-975051:+
Coord C1 exon
chr13:972820-973034
Coord A exon
chr13:974519-974679
Coord C2 exon
chr13:974859-975051
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCACTTCTCCCTGGGCAGGTG
3' ss Score
9.15
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ACTGGGCAGGGGGACTCTGCAACTGGCAGCTCTGAGGTCCTCCACACAGCGATCAGCCATAGCATCTTCTCATCGAGCATCTCCTCTGCAGCTGAGCGCATCAGTGCCATCCTGCCGCAGGAAGAGATGGGGGACCGAAAGTGCCCACTGCTGTTCGTCCAGCTCAATGAGCTGCTCAGCACTGCAGCAGGTCTGGCATGGAGAGAGACAGCTAG
Seq A exon
GTGGATTAAATTTGAAGAGAAGGTGGAAGATGGAGGGGAGCGCTGGAGCAAACCCCACATCCCAGCACTCCGCCTGCACAGCCTCTTTGAGCTGAGGACATGCCTGCAGAAGGGGACAGTGCTGCTGGATCTGAGTGCCCACAGTTTCAAGGAAATAATCG
Seq C2 exon
GAAAAGCACTCTCTGCGGAGCCTGAGGTATGGGAGCCCGAGCTGCGAGACTGCCTGTCAGCTTTGCTGCTCCGTCAGCCACTGCACCGAACTACCATGGCCCCGCTGCGTGTGCTCACAGAGCTCAGCCTTGCTCCCTGCAGAGGTACACCTGGCACCACAGCAGGGGCTGGCATGCTGCTGCTGTCCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(19.4=85.5)
C2:
PF075658=Band_3_cyto=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGAGCATCTCCTCTGCA
R:
CATGGTAGTTCGGTGCAGTGG
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]