BtaEX6040814 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53242105-53243151:+
Coord C1 exon
chr7:53242105-53242232
Coord A exon
chr7:53242584-53242744
Coord C2 exon
chr7:53243038-53243151
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTCTGCCCCTCTCACCATAGGTG
3' ss Score
11.54
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
CTCAGCCCTGATGGCCCCTTAGACACAGACAGCAGGGAACTGGAGGTACCCAAGGACCCTCCGCTCTTCATTCAGCTGAATGAGCTGCTGGGCTGGCCCCACGCACCCGAGTGGAAAGAGACAGGCAG
Seq A exon
GTGGGTGCTGTTTGAGGAGAAGTTGGAAGTGGGTGCAGGCCGGTGGAGCACCCCCCACGTGCCCACCGTGGCACTGCCCAGCCTCCAGAAGCTCCGCAGCTTGTTGGCCAAGGGCCTTGTCCTGCTGGACTGTCCAGCTCTGAGCCTCCAGGAGCTCACAG
Seq C2 exon
AGCAAGTGACCAGAGTGGAGTCGCTGAGCCCAGAGCTGAGAGGGAAGCTGAAGGCTTTGCTGCTGCAGAGACCCCAGCACCTCATCCAGACCCCATGCACCGGCCCCTGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.036 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(56.6=85.5)
C2:
PF075658=Band_3_cyto=PD(42.2=89.7),PF075658=Band_3_cyto=PU(6.1=23.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATGGCCCCTTAGACA
R:
CCGGTGCATGGGGTCTGG
Band lengths:
226-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]