RnoEX6058535 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29352749-29353909:+
Coord C1 exon
chr18:29352749-29353000
Coord A exon
chr18:29353285-29353445
Coord C2 exon
chr18:29353796-29353909
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTGTATCCCTTCATCACAGGTG
3' ss Score
8.23
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
CACGGCTCCCAAGATTGGTACAAGTCTTTCCAAGATGAAGCTGCCAGGCCAAGAGGATTTTGAAGGCTCTGATGCTCATGAAAACGTTTGCTCTGAGCAACTGGACGGTGACCTAGGCCCTGGCTCTGGCCTTGATGGACCCTCAGACATAGACAATGGGAAAGCTCAGGGATGCAAGGACCCGCTGCTCTTCATTCAACTAAATGAGCTGCTGGGCTGGCCCCAGGCACTGGAGTGGCGAGAGACAGGCAG
Seq A exon
GTGGCTGCTGTTTGAGGAGAAGCTAGACATAGGCGCGGGCCGATGGAGTGCCCCCCATGTGCCTACCTTGGCGCTCCCCAGCCTGCAGAAGCTTCGAGGTCTGTTGGCCGAGGGCATTGTATTGCTAGACTGTCCGGCTCGGAGCCTCCTGGAGCTTGTGG
Seq C2 exon
AGCAGGTCGTCAGTGGCGAGTCGCTGAGCCCAGAACTGAGAGGGCAGCTTCAGGCCTTGCTCCTGCAGAGACCCCAGCACCACATCCAGACCACAGGCATCCGGCCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(52.8=85.5)
C2:
PF075658=Band_3_cyto=FE(42.7=100),PF075658=Band_3_cyto=PU(2.9=10.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTGGACGGTGACCTAG
R:
GATGCCTGTGGTCTGGATGTG
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]