HsaINT0000636 @ hg19
Intron Retention
Gene
ENSG00000167972 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:33]
Coordinates
chr16:2342141-2345741:-
Coord C1 exon
chr16:2345591-2345741
Coord A exon
chr16:2342240-2345590
Coord C2 exon
chr16:2342141-2342239
Length
3351 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
ATGCTGGGTCTGTTTTTCAGGTT
3' ss Score
9.65
Exon sequences
Seq C1 exon
GTGCCGGCTATCACATGACGCTGGTGAAGGAGCCGCACTGCAACCCGGAAGACATCTCCCAGCTGGTCCACCACCACGTGCCCAACGCCACGCTGGAGAGCAGCGCTGGGGCCGAGCTGTCTTTCATCCTTCCCAGAGAGAGCACGCACAG
Seq A exon
GTACGCCTCCCAGGGAGGGCACGCACAGGTATACATCCAAGATGGGATCCCCATGGGCCATGAGGGCTTTGTGCTCAGAGGCACCTGCTCTGCCCCTCTCTGGCCTGGCCAGTCGGCACTCTTAGACCCTCAGCCTGGGCACCATCAGCCCAGATGAATCTGCTTGGCTGGGTCCTAGGTGCCAGGCCTCCTAGCAAGGAGAAACATAATTAGGACCTGAAAAGGAGAAGCACGTATCTGACTCACCAAAAGGGTGCTCAGCGCTGATGCAGGGCTCACACTCCCCCTTCTGACACCAGGCTCAACACGTGCTGCGGCTGCACTCAGAACTACTCGTGAAACCGAGTCTGTATTTGTATGTGGGTGGTGAATTTGGTCTCAGTGTCAGAGCTGGAGATGTTACCACCTGCTCATCACTGTCTCACACACACGGCAGAACCAGCAAGGGGAGGGAAGCCAGTGTTCCATGACACTATCTATCAGTCTGGATATTATCTGGATAATATCAGTTTATTGCACTTTTCTCCAGTTTGTTGTTTGATTTTGTCAGATTTTTTTCCATTTTACATTTATTTATTTTATTTGTTATTTATTTATTATTTGTTTTGAGATGGAGCCTCACTCTGCTGCCCAGTCCAGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGCACCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGTCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTAAGATGTCAGGCATGAGCCACCATGCCTGGCCACATTTGTTTATTTTAAAAACAAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCACAACTCACTGCAGCCTTGAATTCCTGGGCTCGTGATCTCCCACCTCAGCCTCCCGAATAGTTGGGACTACAGGTGTGTATCAACATGTCCGGCTAGTTTTTTTATTTTTTTTGTAGAGATGGGGTCTTGTTATGTTGCCCAAGCTGGTCTTGAACTCCTGGGCTTAAGTGATCCTTCCGCCTCAGCCTCCCAAAGTTCTGGGATTCCAGGTGTGAGCCACTGCACCCGGCCTAGATTTTGTACTTAATGTAGCAACATCCTTTCTCTTGTGACTTCTTCTATTAATTTTATTCTTAGAAAGTGTTTCGCAGCTGTGCATAGTGGCGCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGACCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACACGGTGAAACCTCGTCTCTACTAAAAAAAAAAAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTGAACCCAGGAGCAGAGGTTGCAGTGAGCCGAAATCACACCCCTGCACCCCTGCACCCCTGGATTCCAGCCTGGGTGACAGAGGGAGACTCCATCTCAAAAAAAAAAAAAGAAAGAAAAAACCAGGGAATCAAACCATATGAACCTCACTTTTAGCCAGGCATGGTTGCTCATGCCTGTAATCCCAACACTTTCAGAAGCCAAGGCAGAAGGAGAAGGAGATCAGCTTGGGCGACATAGTGAGACCCCATCTCTACAAAAAAATTAAAAATTAGCCACATGGCCAGGCACGGTGGCTCACACCTGTAATCCCAGCACTTGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAACAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCATGAAGCCGGGAGGCAGATCTTGCAGTGAGCCAAGATCGCGCCACCGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGTCTCAAAAAAAAAAAAAAAACTTAGCCACGTGTAGTTGTGCACACCTGTAGCCCCAGACACTTGGGAGGCTGAGGTGAGAGGATTGCTTGAGCCCGGGAGGTCAAGGCTTCAGTGAGCCGAGATTATACCACTGCACTCCAGCCTGAGTGACAGACCAAGACCCTGTCTCCAAAAAAAAAAAAAAAAAAAAAGGCATTTTGGCCAGGCACGGTAGCTTGGTAGCTCATTGCCTGTAATCCCAGCACTTTGGGAGGTCAGGGCAGGTGGATCACAGGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGCGCCTATAGTCCCAGCTACTCTGGAGGTTGAGGCAGGAGAATGCCATGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGACTGTGCCACTGCACTGCAGCCTGGGTGACAGAGCAAAACTCCATCTAAAGAAAAAAAGAAAAAAAAAGGTATTTCAAGGAATTAACCTCCTGTGGCCCCTGCCCCATTCTATAGGGGGATTAGGGGGGTGATTCATTTTAGTTTAGTTTAGTTTAGTTTTTGGAGACGGAGTCTTGCTCTGTTGCCCGGGCTGGAGTCCAGTGGTGCGATCTCAGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACAAGCCGCCATGACTGGGTAGTTTTTGTTGTTGTTGTTGTTTGTTGTTTTGTTTTGTTTTATTTATTTTAGTAGAGACAGAGTTTCACCGTGTTGCTCAGGCTGGTCTCGAACTCCTGAGTTCAGGCAATTCGCCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGATACTGCACCTGGCCTCCTTATTTTTTTAATTTTATTTATTTATTTATTTTTTTGAGACAGAGTTTCACTCTGCCACCCAGGCTGGAGTGCAGTAGCGCAATCTCGGTTCACTGCAGCCTCCACCTCCTGGGTTCAAGTGTTCTCCTGCCTCTGCCTTCTGAGTAGCTGGGACTACAGGCACCTGCTACCACACGTGGCTAATTTTTTATGTTTTTAATAGCGACAGGTTTCACCATGTTGACTAGACTGGTATCGAACTCCTGATCTCAGGTGATCCGCCCGCCTTGGCGTCCCAAAGTGCTGGGGTTACAGGTGTGAGGCACTGTGCCTGGCCGAGGGGGGGTGATGCTTTAGGAACAAATTATCTAGAAAGTCACTGAGAAGTGACTCATAATGCTGGGTCTGTTTTTCAG
Seq C2 exon
GTTTGAAGGTCTCTTTGCTAAACTGGAGAAGAAGCAGAAAGAGCTGGGCATTGCCAGCTTTGGGGCATCCATCACCACCATGGAGGAAGTCTTCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167972-ABCA3:NM_001089:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)