GgaINT0016423 @ galGal4
Intron Retention
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13576671-13577516:-
Coord C1 exon
chr14:13577366-13577516
Coord A exon
chr14:13576770-13577365
Coord C2 exon
chr14:13576671-13576769
Length
596 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CACCTCGCTTGTCCTTGCAGGTT
3' ss Score
11.2
Exon sequences
Seq C1 exon
GGGCGGGGTACCACATGGTGATGGTGAAGGAGCCGTACTGTAACCTGGGGGAGATCTCCCGCCTCATCTGTCAGTACGTGCCCAACGCCACCATGGAGAGCAATGCCGGGGCAGAGCTGTCCTTCATCCTGCCCAAAGAGAGCACTCACAG
Seq A exon
GTAACAGCATCTTCTGCCCTCCCTCCATGCATGGATCCCCCTACGCACACTGGGGCCCGGCTGCTGTAATCGTGGGATAGCTGGGAATGGGAGCTGCTCTCCACATCTTGGAAGGTGCAGGGGGACATGCAAGGGTACAGCTGCAGTGCTGGTCCTGGAAAAGTGGCTTTGGTTCCTCTTTTCACTGCAGTCCTCTCTTGAGTCTGCTGGTGTGTCGCTGTCTCTCCAGCATGCCTGTCATGCAGTGACTGCATGGGATGGGGTGTGGGAGGCTGGGAGCAATGAGTCTCTGGACAGGGCGGTGTGATAAGGGTGGCTGAGGCTACCTGTGCAAAAGCAGCAGCAGAAAATGGAGCCTGAAAGCTGCTCCTGGGGAGAGTGCTGCAGGAGCATCATAAGATTCTCATCTCCTCACCTCTGACTGCGCTGAAATCCAGGGGCTGGGGATACAGGATGCCACGTTGTTCAGCTCTGTCTGCTGTCCATTAAGCCATCATTCTAGTGTCCCCAAGCTGGGGAGCTCTGCCTGGTGGGGCTGGCCTCATGCCAGCAGAAAGGAGGAGCAGTAATACCTGACACCTCGCTTGTCCTTGCAG
Seq C2 exon
GTTTGAGGCCCTATTCACAGAGCTGGAGCTGAAGCGGGAGGAGCTGGGCATCGCCAGCTATGGGGCCTCAGTCACCACCATGGAGGAAGTCTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967:ENSGALT00000003054:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGATGGTGAAGGAGCC
R:
AGACTTCCTCCATGGTGGTGA
Band lengths:
230-826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]