DreINT0023653 @ danRer10
Intron Retention
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12506986-12514282:+
Coord C1 exon
chr3:12506986-12507158
Coord A exon
chr3:12507159-12514183
Coord C2 exon
chr3:12514184-12514282
Length
7025 bp
Sequences
Splice sites
5' ss Seq
CCAGTGCTG
5' ss Score
-9.04
3' ss Seq
TTTGTTGTGTGTTTTTGCAGGTT
3' ss Score
11.25
Exon sequences
Seq C1 exon
GTGGTGATGTTGGACGAGCCCACCTCAGGAATGGACCCCTCAGCCCGTCGGGCCACCTGGGACCTGCTGCAGGGCGAGAAACGTGGCCGCACCATCCTGCTTACCACACACTTCATGGACGAGGCCGACCTGCTGGGAGATCGCATCGCCATCATGGCCAGCGGAGAGCTCCA
Seq A exon
GTGCTGCGGCTCGCCACTCTTCCTCAAGAACAAATATGGTACATCACGGCGAGTTTATTCATGTAGCACATTTCGTACACAATGGTAATTCAAAGCGTTTAAATTGATTAAAAACAGACTAAAGTGTGTTTTAAAGGAACGAAAACGAAAAGAAAGCCATAATAGTGTGATCTGTGAGACGTAGCATTCAGTGAAGGCACAGCTAAACTCATTCACAGTGCTAACCACTGAGCCACCCTGATTTATTCTTCGTTATGAGAATGCATCTAAGGCAAGGCAAGGCAAGGCAAGTTTATTTATATAGCACATTTCATACACAATGGCAATTCAAAGTGCTTTACATAAACAATAATAAAAGAAACAAGTAAAATAAAAATAAAAACAAATAATAAAAATGCGTAAAAACAAAACAAAACATAAAAACAGGTAAAATGTGATATGAAAGAATGAAGAAGAAGAGAAAAACATGATAGTGGATTCTGTCGGACGCAGCACTGTGGTCATTCAGTAAAGGCACAGCTAAACAGATGTGTTTTCAGTCTTGATTTGAATGTGCCTAATGTTGGAGCACATCTGATCATGCTGATTCCAGCAGCGAGGGGCATAGTGGCTAAAAGCCGATTCACCCTGCTTTGACTGAACTCTTGGAACTTCTAGTTTATATGATCCTAATGATCTGAGTGATCTGTTAGGTTTGTATTCAGTGAGCATATCTGTGATGTATTTAGGTCCTAGGCCATTTAGTGATTTATAGACCAGGAATAATACTTTAAAATCTATTCTGAATGTAACTGGCAGCCAGTGTAAAGACCTGAGGACAGGTGTGATGTGCTCTGATTTTCTGGTTCTGGTTAGAATTCTGGCTGCAGCGTTCTGGATGAGCTGCAACTGTCTGACTGTCTTTTTAGGAAGACCAGTGAGGAGTCCATTACAGTAATCCACCCTGCTGCTGATAAAAGCATGAACAAGTTTTTCTAAATCTTCACTAGAAACAAAGCATCTGATTCTTGCTATGTTTTTGAGATGATAGTATGCTGATTTACTGACTGCTTTGACATGACTGTTGAAACTCAGATCTGACTCAAGAGTCACACCAAGATTCTTGACATTTTTTGTCGTTTGACCTTTAGTGCCAAGGTACGCATTCACCTTGAGAACCTCATCTCTGTTTCCAAACACAATCATTTCAGTTTTCTCTTTGTTTAACTGAAGAAAGTTTTGACACATCCAATTGCTCATTTCATCAATGCATTGGCAGAGGGTGTCAATGGGGCTGTAGTCATTAGGCAGTAAGGCTAGGTAGATCTGAGTGTCATCAGCATAGCTGTGGTAGGAGATTTGGTTCTTTCTCATTTTTTGGCTCAGAGGGAGCATGTAAAGGTTGAACAGGAGAGGTGCCAGAATAGAGCCTTGTGGGACTCCACATGTCATGGGTGTCCACCTCGACCTATGGTCACCTATACTGACATGGTAACCTCTACCTTCAAGGTAAGATCTAAACCATTTGAGGACTGTCCCAGACAGCCCAACCCAGTTTTCCAGCCTATCCAGAAGTATGCTGTGATCGACAGTGTCAAATGCAGCACTGAGATCCAACAATACCAGCACTGTTATTTTACCTGAATCTGTATTTAGGCGTATATCATTGATTATCTTTATAAGAGCGCTCTCTGTACTGTGATGTGATCTGAAACCAGATTGAAAATTGTCTAAACACCCCCTGAAGTTTAAGAACTTGTTAACCTGGTTAAATACAACTTTTTCAATGATTTTGCCAATGAAAGGGAGATTTGAGATTGGCCTGTAATTGCTCAATAGGGTGTTATCCAGGTTGCTCTTCTTTAAATGTGCTCTTCTTCATCTACATGCCTAAATGCATTTAGTTGCTGCCATGTGATTGGCTGATCAGATATTTGTGTTAATTCGCTGTTGAACAGGTGTACTCAACAATAAAATAGGGCTCCAATAAGGACTCAGCAAGCAAAAGAACATGTATCTGAATATCTCCTCTTGTGCTCCTGACAGGTGCTGGTTATCATATGGTTATTGTGAAGGATGCGTTTTGTAACGTGTCGGAGATCACCCGTCTGGTCCACATGTACGTGCCTGACGCCACATTAGAGAGCAGTGCAGGCGCTGAACTCTCATACATACTGCCCAAAGAGAGCACCAGCCGGTAAGACAACACACACACACACAATAACAATAACAACAAACACACCAGTCTCCCTGCACAACATATTATATACAGTTGAAGTTATTTGCCATCCTGTGAATTCATTCATTCATTTTCTTGTTGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACTGCCAACTTATCCAGCAAGTTTTTACGCAGCTGATGCTACCGCAACCCATCTCTGGGAAACATCCACACACACATAAACAAACTCCTACACTACAGACAATTTAGCCTACCCAATCCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAAGGCAGGGAGAACATACAGAAACGCCAACTGAGCCGAGGTTCGAACCAGCGACCCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTAATGGGCCACTGCCTCGCCCCATCCTGTGAATTTTGTTTACTTATTCAAATATTTCTGAAATGACGTTTAACAGAGCAAGGAAATTTTCACAGTATTTCCTATAATATTTTTTCTTCTGGAGAAAGTCTTATTTGTTTAATTTCGGCTAGAATAAAAGCAGTTTTAATAAAAAAAACATTTAAAGGATAAAATGATTAGCCCCCTTAAGCAATATTTGTTTTGGATAGTCTACAGAACAAACCATCTTTATTGTAACGATCACCAGCGATCTAACAACCAGAGATCGCTGGTAAACACTCACATTCACAAATCCGCCATGTTATGGACTACATATTCAGTCATTCAACACACACACACACACACCTGCTCCAAGTGACCAGTGATTGCAAACACTCACACAGCTGAAGCTGCTCACAGACTGATTACTTGGACTATATGAACAGCACAAACACACACAGTAGCCTCTTTCACACAGTGATACCGGTAAATATCCGAAAAACGACTTTACCGGTAAATTTTAAAAGGCGCTGTTCACACAGGCGAGGACGTTAAGAAATTTTTCCGGAGAAGACCGTTCACACTTCTATTCCAAAATAAAAATAGTATTCCAGTAAATTCTGACATCATTAGGCAGAGATGACCTTTAAACAGCTGGGCTTGTCTTTGTAAACATTTTACTACGCTACAAACTCTGTGGATGGATGAGTATTGTGAACAACTTTGATGAAAACATATGGAGGAACACTTTCGCATGTCGAGGTTTACATGATAAGTGTGTGTGCTCACTGGCTCCTTCACGGGCACACGCAACGCGTAAAGGCTGATTTATACTTCTGCATCAAATGCACACGTATGCTACGGCGCTGACGCATAGCCCTTTGAGGCCGTTGGCGTCGCTGACGTGCACCTCTCAAAAAATGTAACTACACGTCGCAACGACGCGTAGCGCAAGCTGTGTGATTGGTCGGCTTGGTAGCGCTGACGTGTCTGGGCGGGACCGAGAGCGGCGTGAATGGCGCGAGCCTGATGGAGCGATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTCTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAAATGAGCGAGTTTGAGCCACTTGTACATTCCGGAAGTGTTCAGGAAAAGCAAAACAGCAGCGAAGAAACTCGACACAGAGGAACATTTACACCTCACTGACAACTAGCGTTTCGGAAGTGTTAATGCAGACCAACAGAGACAGCGCGCAGAAGTATAAATGCACAGCTACGCACGTTGCATGCGCCAATGGTTACGCCGGTCACTTGACTCAGAAGTATAAACCAGGCTTAAAGCAACTAAAGGAAGCAGAGCTTGAAGTTAAACAAACAATGGCTTATCATAAGCATCTTATCGATAATTATTTACACAGTTGGCATTAGGAAGGAACAAATAAACATTATCTGACTAACATCTAGCAGCTAAATGTGTTTGGAAAATTTTTTTAAAGGGTTTTATTTTCATAAACTACGTGAATGTGAATGCGTCTGAGTGTTCTGATTGGCTAAAGTAGATGTCTCACGTCAGCACGTTCTAGACGTGCACGCGCTCTTTCCGGCACTCTTCCTTCAGCGTTCACACAGCGCAGCATTCCGGCAAATAACCAGTAATGTTACAACTTCTATTTCCGGAAAATAACCAAAACAAATTTACCGGTATTTTCAAAAAGGGCTTGTTCACACATACACACCTTTCCGGAAAATAGTCGGTAATTTCTTGTCGGTAAAATTACTGTTTTGTGACCTGTAACAAACACCAGTGATCTTGGGACTAGATGTCTACCGAATTACAGTGGCTAATTTCCTCTTATCACCAGGGCTATTTAATTCAGTTTGTGTGCCCCTCTCATTGTCTGTTGTTTTTGTGTTGCTCCTATGTGTTGCGATGTCCGTGTGTTCCTGGTTTGTTTTGCCCTGTCTTAGTTTTGCCTTGTTTTTTCATTGTGGGCCCTATCATACACCCGGCGCAGTGTGGCGCAAGGCGTGGCGCAATAGTCTTTTGGTAGTTTCAGCTTGGCGCAAGAGTCGTTTTGAGGCGTTGCGCTACACTGTTTAAATAGCAAATGCATTAGCGCTCATTTGTGCGCCCATAGTCGTTCTGGTCTAAAAAGGAAGGCGTTCTGAGGCGGACCGCTGGCGCGTTGCTATTTTGAGAAACTATAATAGATTTTTTATTAGACCAAAACTAACCCGGTCTAAACTCCGGCGCAGAGTTGCGCCTCGCTTACACACTGCTTAATACGCACAAGAGAGCAATAGGCAAATATCTTTACATATGAAAAAAATGTAAATATTAAGGATATGTATAGGATATAATAAGAATAGATATAGGATATAAATATAAAGGATTAAAATATTACAAAACATATTATTTTCTAGCCTACATAAATATGAAAAATCACTGCTTTTATGTCTCTTCATCTCGGGAGGCTTTTTCACTTCATTCATAACAATTCGCTTTTGTATAATGTTATTATTATTAGCAGTATTATTTATTATATCCATATTTATATTTGTTTTATTAAAAACAAGCTTAGATTTGCCCACCTGTCAGGTTTTAGACAATATGGGGCACAGCATGTGTTTTAGGATAAAACTCAGGTTTTTGAGCACATTTTGTTATTATTGTTCATTTATTCGTTTGCTGGAAATTAGAACTGAATTTAGAAATAGTTTTGAAACGAATATTTGCGCTTAACAAACAAAATTAATTATTTATAGACTAATTGATGTCTGTGCGTAAAGGTTTCCCTATCCAAGAGCGAAAGTGAAAGTGATCCATTATCTCTCATTCTCATGCAGTAGATGCTCTGTTTAACTGTTTTCTGTTAAAAAAACTGTTAACTGTTTGCTTGTGAAATGCTCAGTTTTTCCACTTCCACTTACTTTACGTCCTGTAAATGGCAAATGCGCTCTTGGCGCGACACAGCTGACTCTTAAAGGGAATGGGAGATGAGACTCTAATTGGTTTATTCTCAAAACACACCTATAACTCATTAAGAAAATAAACTCAACCCTTTTAGACTATCCACCACGGCGCAAGGCAGATTTCCCGTCCTTAAATTAGCAAAAACGCGTTCTGACACGCCCTGAAAGCGTTTGCGCCCTGCGTTTTACGCTCTGCGCATGGACCGTCAAAATAGAGCCCTAAATGTTTAAATGCAGCGTTTGGACCCGCTCTGTTTTTTCCTCCTCTGAACTTTACACCGGATGGTAACACTTATACAATTACCCCAACTTTACCCTAATTAACCTAGTTAAGCCTTTAAATGTCCCTTTAAGCTGTGTGGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGGGTTGAAAAAATCGTTTCTGTTAAACAGAATTTGGGGAAAAATATTCAGGAGTGCTAATAATTCTGACTTCAACTGTGTATATGTATCAATAAGTCAGCCAAAAATATTACTGACTTACAGTACAAAGCATTAAGGTTCATCCCCATCATCATCATTGCTTTTTAATCAATAATCTCAATTGCTTAAATATTTCTAAGCTCACTGAGACCCTTGAGTTATAAAGAAGCGGTTTAATGTCTTCATACAAATGAATCGTCTGAGTATTGAATCTTGGTTCTTGTGTCTGATTCTTGAGATCTCCCGTAGCAACAGAAGGACTAAATTTACACATCGATCCATTTCTCGGTGAAGGCTTCAAAACAAAGTTCTTGTGCAACAACCTTCAGTCTGAGAGAAACATCTTGAAAGCACATTGTATAAGGAGTGGTTTACCTAACAAGTACATGTTATTTTGAGAAAGGAAAAACAAGTTGAGAGAGATTTTGCAAGGTTGTTTGCTTTTAAAGTCCACGTGAAATCGAAATTTACACCATTTTGGTGACTGTCGCTTTAAAATGAAATGAGATTGTGCTCTTTTCAAAAGAGGGAGGAGCTATAAATGCCTGGGTGTCAGCATAGTGGCAGATTCAAAAACAAGACTAACGTATTATTCTAATGAGGAAGAGATCGTCACTTGTGAGCAGGGCTTTCCCCCTCTGATGACAAGTACAAAGGGAGTGTTTCTGCAGGCCGTTTTAATCCAGTGTTATTATAAATAATTAAATTAATATGTTTTTACCATTAGAAGATGCTTATATTCACACACTGCTGCAACACAACTGTGTTTAAACCTCTTATAAAGTGATTTTTGTGTAATAGATGCAATTTAAGAGCTATAAACTATTTTAAGAGAACTCTTTGTGGTATGTAACATGTTTTGTTGTGTGTTTTTGCAG
Seq C2 exon
GTTTGAGCTGCTGTTTGCTGAGCTGGAGATGAATCGAGATGAGTTGGGCATCGCCAGTTATGGGGCGTCTGTTACCACCATGGAGGAGGTTTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524:ENSDART00000165980:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.5=11.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]