BtaINT0011035 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1808276-1810813:-
Coord C1 exon
chr25:1810663-1810813
Coord A exon
chr25:1808375-1810662
Coord C2 exon
chr25:1808276-1808374
Length
2288 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCTCTTTTTTTTTTTTTCAGGTT
3' ss Score
13.28
Exon sequences
Seq C1 exon
GCGCAGGCTACCACATGACGCTGGTGAAGGAGCCCCACTGCAACCCCGAGGGCATCTCCCGGCTGGTCCAGCACCACGTCCCCAACGCCACCCTGGAGAGCAGCGCCGGGGCAGAGCTGTCGTTCATTCTTCCCAAGGAGAGCACGCACAG
Seq A exon
GTACATACGTGTGGCATGTGTGTGTCCCAGAGCATGCACAGGTACATACATGTACCCCAGAACACACACAGATACATACGTGTCCCAGAGCATGCACGGGCACGTCTGTGTCCCAGAGCACACATGGGTACATATGTGTCCCAGAGCATGCACAGGTACATATGTGTACCAGAGCACACATGGGCATGTCTGTGTCCCAGAACATGCACAGGTATATACGTGTCCCAGAGCACACACGGACACGTGCGTGTCCCAGAGCATGCACAAGTACATATGTGTCCCAGAGCACGCACAGGCACATGTTTGTCCCAGAGTATGCACAGGTACATCTGTGTCCCAGAACGTGCACAGGTACATACGTGTCCCAGACTGTGCACAGGTACATACGTGTCACAGAGCATGCATGGGCATGTGTGTGTCCCAGAGCGCACACAAGTACATATGTGTCCCAGAGCATGCAAAGGTATATACGTGTCACAGAGCACACATGAGCACGTGTGTGTCCCAGGGCATGCACAGGTACATATGTGTCCTGGAGCATGCTTAGGCACACATCCTAGAGAGAGCACACAGAGGTACATACATGTCCCAGAACACACACAGGTGCAGATCTGAAAAGGGGGCTCAGTGGGACTTAAGGGGCCTGTGTGTGAGACACGCACCCTGCACCTGTGGGCTTGGCCAGGGTCCCTCTCAGCTCCTGGGCCGGTGATGGTTGGTACCTGGTGAGTCTACTTGCTGGGCCTGGGGTGCCAGGCCTCCCTGTGCGTCAGGGCTGTACCCGAGGGGAAGGGTGGTCATCACAGGGTGTTGGGTGCACTGGCGCTCTCCATGCGTAGCTTGCTCCTCACACTGCAACCATTCAGGGTTAGTGTGCAGCTGTGAACTCACATATCTTCTTGGTCTCGTAGTCTGAGCTGTGGACACATGCCTCGTAAACAGAGCAGTCTCCCCATGTGGGCAGGTAAAAACGAACTTCTGATTCACATGCAGAAACTTTGGAATAGAAAACTTACAGGTGCAATTAATCTTGCTACCAGCCTGACTGAGCAATGTGGTTTTAATCACGGCAGCGTTCCCTGACTTAGATGTACTATAATTTAACACCTACTCTGTCATCACATGTTCATGTTTTACAGACACACACATGCAAATATGCTAATGCACATCTTTCTAGAAAACTCTGTTGAGGTCTCCAGTGGCCCCTTGGGATGGATCCCCAGCAGTGGGGTACCTGTTACCAGACTCTCCCCGGACAGGTTTTGAGTTTGACTTCCCCAGCAGCAGGACGGGGAGGGTCCATTTTACCGACGCCAGCTTTGAATCAGACTTCTCTTCATTACTTGTGTATCTCATGGGTGGGAATGACCCACACTGCGTACTTATCATTTGTGTTTCTTCCACTCCTGCTGGCAGACTGAGCACTTCCGGTGCTTACTGGGTGCTAAGCGTCGCTGCTTCTGGCCGTTGCACGCCCCAGTCCTGTGTGTTCAGTATTAACATCGACCACTTCTGTTGTACCTTTTTTCCCATTCATTGAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTGGCCTACCAGGCTCCTCAGTCCATGGAATTTTCCAGGCGAGAGTACTGGAGTGGGGTGCCATTTCCTTCTCCAGGGTATTTTCCCAACCGAGGAATCGAACCCGGATCTCCTGCATTGCAGGCAGACGCTTTACCGTCTGAGCCACCAGGAAGACCTAATTCATTGCTGCCTTCTAATTTTGTGAGAGGTTTTTCCCTCGCAGATATTTTACATCAAATGGGTTCTATCTTTTCCTTTGTGATTTCTCCTTAGAAAGGACTTCTGTGTCCTACAAGTCCATGAATATTCCCCAATTTCTTTTGGTTTGGTCTGTGACTTCATGTACATGTGTGCCATCAAAGAGTGCCTTATAGGCCCAAGTACCCAAAAGAGGTTGTGTGGGGACTTCCCTGGCAATTTGACGGTTGGGATTCGGCACTTTCACTGCCGGGTTCAATCCCTGGTCAGGGAACTGAGATTCCACAAGCCACACAGCATGGCTGGCCAAAAAAAAAAGATTATTTAAAAAAGTGCTATGTTGGAGGAGGAAGGGGGACAGGGGGTGACAAAGCTGAGCTTTGTTTCTGAGACACCATCTCCAGAGGCTCACCTTCCTTTGCCCCTCCCCCACACTGCACTGAGGTGATTGTTTAGGAACACACCATCTAGAAAGTCACTGAGAAGCGACTTACCACCCTGGTCTCTTTTTTTTTTTTTCAG
Seq C2 exon
GTTTGAAAGTCTTTTTGCTAAACTGGAGAAGAAGCAGAAGGAGCTGGGCATTGCCAGCTTCGGGGCCTCCGTCACCACCATGGAGGAGGTCTTCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903:ENSBTAT00000019840:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]