HsaINT0000702 @ hg19
Intron Retention
Gene
ENSG00000198691 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:34]
Coordinates
chr1:94458394-94461751:-
Coord C1 exon
chr1:94461665-94461751
Coord A exon
chr1:94458799-94461664
Coord C2 exon
chr1:94458394-94458798
Length
2866 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CATGTGATCTCCTTCCACAGGAC
3' ss Score
11.42
Exon sequences
Seq C1 exon
GTGTTTGTAAATTTTGCTAAACAGCAGACTGAAAGTCATGACCTCCCTCTGCACCCTCGAGCTGCTGGAGCCAGTCGACAAGCCCAG
Seq A exon
GTACCCCTGCTGCTTATGCAGTCCACAGCTTGAGGCAGTTCCTTGGCTCAGAGCCCAGCTGGTTCACTGGGCTTGAGTTGCTCCAAGGCTCAGATATGCCTCCTACAGAGAGCCCCACCCACACCACGGTCCCTACCAAGTCCCCACCACATCCTCATCACATCCTTGCTAAGTCCCTGCCACTGTGTGTTCTGTGCTGAAGAACTTTTCATTCAGTAGTTGTAGGGGTTCCTATTGTAATCAGGAAACCATCTGGATAGCATGGGAGAGCATTTTTGAAAAGAACTTTCCCATGTTTTTGCTTACAGCAAAAAAGCTTGGATTTGGGGAATAAGGAGCAGAGAAGGTAATAGAGAATATTAGAATGTTTTGGGTGCTTGACATCTATGTCTGGACATGTGTTTGAGTTTCAAGGGAAGGGACTTAACTGGCACATCATTTCAGTGTCAGACACATTTGGTTAGATCAAGGAATAGCATCTGTTGTAGGAAGAGGGCTCTTTGTTCTTTATAAAAATTACAAGAAGATGGAGAAAGAAGCAATAGGAGGTATGTCTCCTGGCTTGTGATAACTCTTGGAATAGGTGCTTGTAGGTTCCTGCCCTGGCACAGTGCCCCATGTAAGGAGCACACCACCCAAGAAGGAGAGAGCTAGAGCAAGTACTGGAGGAGGCACCAGCATCCCAATGCCTTGGCTTAAGCCTGGGATTGTAGAGGGATGAATTAGCCACTCTCTTCTGACTTACCTGGAGAGTAAATCAAATCAAATCAAGAAGCAAGGATATGCAAAAACCTTATTTCCCCATAAAGTTTTTATTCTGCCCAGTTTCTGGATTGCAAGAAAAACCAAATACAGCTAATGATTGAAACACTGCTGTCTAAAGCAGTGCTTGTGATGAATTTTTTCCCTTCCTCTTGACCAGCAGAGACCTAATGGCTACTTGGCAAAACTGACTTTGTCTTCCCACCCCTTACCTGCCAGAGGGCCCAGAAATGCCTAAGGCTCCTTTAGTTACAGAAAGTTTGCTTTTACTGAGATCTTCCAGCCACTGATTCCCATTTATAGATCTGGTGATTGCTGTTGACATCAGTTGAAAATTATTTTTAAAAACCACTTGCAGTTGCAAATCCTTTTTATAACTCTGTAACTCAGAATATAGAATTGGGTAGCAAAATTGTTTCCCAGAATTACCAATGGTCTCCCCACCCCTGCCTGGCATGTTCCCTCTTAAAGGACTAATCCCACCACATCACCTCTGGGCCAGGCAGAACATCAGGGGTGCTGATGTTCTGTGATCTACAGCAGTTAATTCCAAACTTTTCTCCCTTATTGGATGAGATCATTTTTCTATTGTGTTTTTTACATTTTTGTTCACAAAGATTAGAAAACCTGCAACACACTTATTGGCATATTTTTCTGATAATTTTCATCCAAAACCTAATTCTGACTTTACAACATACTATCTTTACAAAGGTTTGCAAAAATTCTTTCATATAGCATTGTATATGTCTGTCATGAAATAATAGTAAGTATATTATTGTTTACATTATACCACTTCAAAATAATTTCCTTTAAAGTATTCTTCAAACAAGAAAAAGGCAATTTCTCTCAAGAAGTTTTAGAGAGAATTTACAACTTGCTCCTAAGCAAATGTGAGAACTTCAGGAGGTTCATCTGGCCATTGGCTTTACAACTCCAAATTGTGAGCCAGGACCACACAGATATTTCTCTAGAAATCAGCGTTTGCTTACCAAGAACATTTTTACTCTCCAAAGGACTCCATCCTGGAAAACATGTTTTGGGATAAGGTCTTATGCAATCTTATACTCTGTTATTAAAACCAGTGAGGGTCAAGGTGTTAATAGATTAAGTAGTGACAGATGATCAGACAACTTAGAAACATCCTAAATAGGTTAATAATTATGTGACCATCGCATGTGCATTCCCAAATTAGGAACAACTCAGATCAATTTCTAATCCTTATTCTTACACTGTTCCAGTTCCCCCATATAACTCGTATCTTTGTGTTAGTTTCAGAAGTTTCTGAAGTACCCTCAGCCTTGATGGGGATCCTCGCACCACCTCAAATCCTGTTCTCAGCCCTAAGAACTGTGTTAGTCATCCTCTTAAGAGGATGTGTGATTTTAAATCAGATAATGGGATAAACCACATTTCGTCTAGACTGGTCAGGCCTTTGTCCAGTCCCCTCCTCGCCCACACTACCCCAGCTCCACAGCGGGCATTGGTTCAGGAATTCAACCCACACTTTATAACTGGAGACAGTATCTCTCCAGTTAAAAAGGTCACCTTGGTGTCCGCTTCTCAAGGAACATGGACATCTTTATTAATCAAAGCCCAAGCTTTGATCTGGAGCCTAATATCCTGCACTCCAGCTCTCATCTCTCCCCTCCCCCAGTCACACTTTCATGCTTCCCAGAGCCACCCCTACAGGAAGTGGTCAAGGGAATTCTATACCTCAGGGCTGACCTAAATTAGGATTTCTTGGCTTTTAAGATAATGGTAACTTTCTTAAGCTAAAAAAGCCCCAAAAGACCCTGTAAGAGCCCTTGGAAACAGCACCATGGGTGTAGCTTCCCCCCAGGATGTAAGCATGTATGCACACATCTCGTATGTGTGTCTTTGTAACAAATGCCTGGATCTTAGTACCAGGGAGACCTGATTCATAGATTTCATAGAGAAGGAGAGAAAGATGGCCCATAACCTGGGTGATCTGACAGAATCACAGTGCCCTCAGCTGAGTGCCCTTCAGAAATTGATTGACAACTGTTTAGCTTTTGAAATCTAAAAGTAGTACAGCATCTCAGAAAACCAAGATGACGCGAGTCCATGTGATCTCCTTCCACAG
Seq C2 exon
GACTGATCTTTCACACCGCTCGTTCCTGCAGCCAGAAAGGAACTCTGGGCAGCTGGAGGCGCAGGAGCCTGTGCCCATATGGTCATCCAAATGGACTGGCCAGCGTAAATGACCCCACTGCAGCAGAAAACAAACACACGAGGAGCATGCAGCGAATTCAGAAAGAGGTCTTTCAGAAGGAAACCGAAACTGACTTGCTCACCTGGAACACCTGATGGTGAAACCAAACAAATACAAAATCCTTCTCCAGACCCCAGAACTAGAAACCCCGGGCCATCCCACTAGCAGCTTTGGCCTCCATATTGCTCTCATTTCAAGCAGATCTGCTTTTCTGCATGTTTGTCTGTGTGTCTGCGTTGTGTGTGATTTTCATGGAAAAATAAAATGCAAATGCACTCATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198691-ABCA4:NM_000350:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)