BtaINT0011099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49683998-49686388:+
Coord C1 exon
chr3:49683998-49684084
Coord A exon
chr3:49684085-49685590
Coord C2 exon
chr3:49685591-49686388
Length
1506 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
AAAACAATTTTCTTCTATAGGAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTATTTGTGAACTTTGCTAAACAGCAGAATGAAACTTACGACCTCCCTTTGCACCCTCGAGCTGCAGGAGCCAGCCGACAGGCCAAG
Seq A exon
GTACCCCTGCCACCCCTTCCCTGTCCACTGCTTGGGGCAGATCCTTGGCTCAGGGACCCAATTGACACACTGGGCCTGCAGGGGCCCCAGACATGCCTCCTGCAGAGAGTCCCACCCATAGCAGCCCTCACCTCCTCCCTGCCACTCCTCACTTGTCTGGGCTGAAGGTAGCTGTGTACCTTCCTTTTATAATCAGGAAACTTTTGGATGGTATCGGAGAACATTTTTGAAAAGAACTTTCTCATATATTTTTGCTTATAGCAAAAAAAAAAAAATTGGATTTTGGAAATAAGCAGGGAAGATAGGAGAGAATATTAAAATATTTCAGTTGTTGGGATACTTGATATATACATCTGGTCTTATGTTTGAGTTTCAAAGTAAGGAAATTAACTGGCACTCATTTCACTGGTGGTCTCATTTGGCTAAAAATCATTCTCTGTTTTATGAAGAGGGCTCTTTGCTCTTTATAAAAATTTCAAGATGATGAAGGAAGTAACAGTAAAAGGTATGTATCCTGGCCTGTCATAACTCTTGGGATACGTGCCTCCACATTCCTGCCCTGACACAGCACCCACGTAAGGAACACATTCATCCCAGTTCCCCAGAAAGAGAACAAAAGAGAGCTGGAGAAAGTCCTGGCGGAGGCGACCTAAGCCTGGGGTGTTAAAGGATCAAATTAATTCAGCCATCCTCTCCTGACTTACCTGGAGAGTAAATCAAATAAAATCAAAGTATGTTTTTCAATAAGCCTAATTTCCCATAAAGTTCTCATTCCTTCCAGTTTCCTGATTATGAGAAAAACCAGGTGCAGGTAATGATTGAAACATTCCTTTCCAAGGCACTATTTGTGATGCATTTTCCCCATTTCTCTTGACCAGCAGAGACCTAATGGCTACTTGGCAAGGCTGACTTTGCCCAGAAATACCTACGTAAAGGCATCTGTCCAGGGAAAATTAGTTCTGCTGAGATTTTACAGCCATTCTTTCTGATTTATAAATCTTATATTTGCTGTTTACACCAGCAGAAAATTATTCTTTGAAAGTAGTTGCAGTTACAAATTCCTTTTGTAACTCAAAATACATAATTTGGTTCCAAAAGTTTTTCCTAAAACTGTCAGTGATCTCCTCACCCCCAGCTGGCATGTGCCCTCATAAAGGGGTAATACCAGGTCATCTCTGGACCTGACAAGGGGCATTCATGATCTGTGATCTGCAGCAGTTAACTCCAAACTTTCCCTCTTACTAGATGTGATCGTTTTCTATTTTGTCTGTCACATTTTAGCATACAGATACTAGAAAACCTACTGCAGCGTATATTTATTAAATCAGCATTTTCCCATAATAAATGTGTGGTTCAAAACCTAACCCTGACTCTGTGACATACAACCTTTATAAAGCTTTGCAAAACCCCTCCTGCAGAGCATTGTACATAAGTAAATGTCATGAAACAAATAGTAATTATATTTTTGTTTACATTATCCCATTTTAAAACAATTTTCTTCTATAG
Seq C2 exon
GAAGTGGACAAAGGGAATTCTGCACCTCAAGGGTGACCTTAATTATGATTTCTTGGCTTTTAAGACAGTAAGGACATGATAACTTCCTTGGGCTAAAAAAACAAACCAAAGGCACCATGAGAAATGTTACAGAGGGTGTGGCTAACACACATGTCAACATGTACGTGCATGGTGGGGCATGAATCTTTAAAACATCTGGATCGTAGAGTCAGAACCTGCAGGATCATCGGCTCCAAACATTACAGACAAGGAAATAAACATAACCTGTAAACTTGGATGATCTGATAGACTTCAGTGCCCTCAGCTGAGCTTCCTTCAGAGCTTGACTGATGGCTATTTGACTTAAAGTCTAAACGCCATCGAACCAGAACACCGAGATGAAGAGAGTCCACCTGATCTCCTTCTACACTGCCCAGGTTTTCTGCTGCAGCTTAAAAAGAACTGTAGGCAGCTGAAAGTGCAGGAGCCTTTGCCATATGGTCATTCACACCAGCCAGCATAAGCAATCCCTTGGCAGCAGAAATGAACACAGAGGAGGCACACAGTAGACTCCAAATGGAGGCTTTTTCAGAAGGAAACAGGAACTGACTCGCTCACCTGAAACACCTGATGGGAAACTTACCCAACCAAGGAGTACAAAACGCGTTTCGTCCAGACCACAGGAGAAGCCTTGGTCCGTCTTCCTCCTGCCCGTGGCCTCCATACTGCTCTTATTTCAAGTGGATCTGCTTTTTGTGTGTGTGTATGTATGTGTGTGTTATTTTTCAAGAGAAAATAAAGTGCAAACATACTTTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACGACCTCCCTTTGCACC
R:
GCTGAGGGCACTGAAGTCTAT
Band lengths:
358-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]