MmuINT0007910 @ mm9
Intron Retention
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121878992-121882979:+
Coord C1 exon
chr3:121878992-121879078
Coord A exon
chr3:121879079-121882631
Coord C2 exon
chr3:121882632-121882979
Length
3553 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
ACGTTGCTTTTTCCATGTAGCTT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTGTTTGTAAACTTCGCTAAACAGCAGACTGAGACCTATGACCTCCCTCTGCACCCCCGGGCTGCTGGAGCCAGCTGGCAAGCCAAG
Seq A exon
GTATCCTACTGCTCTCTCCTAACCACGGCTTAGGTAGGGCTTTAGCTCAGGGGCCTCACTGACTAATTGGGCCTGAGGTGCTCCTGGGCTCAGGTGAGGCTCTGCAGAGAGCCCACCCAGCTCATACCCACAATCCTCCTTGCCTGGGCCCAGGGGTTCTCTAGTAGGAGCTCATCTCAGTTGAACACTTGACCCAGTAGCTGAGTGGCTCCCCACCGTCATCCGAAAGCCATTTGGATGGTGTGGGTGAATCACATTTAAAAGCATTTATCTATGCATGTGTGTCCAACTCAAGTTGTCAGGCTTGAAGGCATATGCCTTTATCCAGGGATACCACCTCACATCATTTTTTGGAAGAAACTGTTCCACACATTTTTCTCCTAACAGCATAAACCCCAAAAATCTCCAAACCTCAAGTTTTAGGAATAAGCAGGGAAAGAAAGAATAGTGAGACATCTTGGCTGTTGAGATATTGACAACACTTCTTGGTCACACTTTGGAGCTTAAAGGGTCCGGGCTGGGATACTGTGCTTCAGTGGTGGACGTGTCTGCTTAAAGCCAATGACTGGAAGGTGGATTCTTTGTTCTTCACGGAAGTATCAAGATGGGAAAGGAAGAAGTGATAGAAAGGGATAGAAGGTACAGGTTGTGGCCCAAGATAAAGCCTGGGGTGGACTTCCTGTACTGCCCTGGGCACAGTGCCCACACTGGGAGACAGTCATTGCCCAGTTTCCCAGGTGGAAAGAATGCTGGAGAAAGTAGTGGGGTTGATGCCAGCAGCCAGATGGCCAGGCTTATTAGTGAGACTTCACAAGGACAAGTCAACCATTTTGTCTGGACTACTGAACAGCAAATCAAATCAAATCAAAGTACTTTAAAAAAAATAGATGTGGAAAAAAAACCTTATTTCCCACTCCTCCCAACCAATTTCTTGATTGCAAGAAAAGTCCAATGCGGCCGAAGAGAAAAGCACATCTTTCCAAGGGCATGCTTCTAAAAGATGTGTCACCACCCCATGGCCACTGGGCAAGGTCGACTTTGTCTCTGTCACCCTCCAGAGGGCCCGGAATGCCTGGCCAACCTTCGAACTGTTGTCTCTCATTTCTCTATCTTACAATTGCTGTTGATACCGGTTGAAAAGTTATTCTCTGAGAGTCACTTACAGTCACGAGTCCTTTTTATAACAGAGAATACAAAATTATTTCTAAGAACTGCCAGTGATCCCTACCCCATACCACAGCATACTGTTTGTTTGTTTGTTTGTTTGTTTATTGTTTGTTTGTTGACTGTATCTCATTGTATAGTCCAGGCTGGCTCCAAGGTCATGGTCTTTCTGCCTCAGCCTCCTGAGGGCTGGGATTACAAATGTTTGCTACCTTAGCCAACAGTGCAGTCCCTCCTACAGGGCTAACACCTGACAACCTCTGGAGCAGGTTGGAGTGCTCATGGCCTGAGATGTGGACGGGTCAGTTCCAACCTTTTCCCCCTTGTCAGCTGTGATCATGTTATTACTGTGTTTGTCACTTTGTTTCTTACCAATGTCTAAGAACCTACTATAACACGTCAGTTAAATTTTCATTTTATAATGAATATTCTATTCAAAATCTAATGCTGACCTAATGACATACTATCTTCATAAAAGTTCACAGAAATCCTTTACATGGAATGCTATATACGTCTGTCATAAAACAGATAGGAATTAAGTTCTTACCTACAGTCCAGTACTTAAGATAATTTCCCTTAAAGTACTCTGAGCACAAGTAACAGGTGAATTATCTCAAGGGCCTCTAGAGAACACACACCCCCACCCCCACCCCTTGCTCAAGCAGGAAAGCCAGCTTCTGGAGGTTACGCAGGCTGATGGCTTCAGAGCTCCTGGTTTTGAGCACAGACTGAAGTGATGTTTCATTGTCTGGAAATCTGCTTCTCGGGGATGTTTTGAGACTCTCCAACAAGACCTGACCTTAGGAAATGTCTCTGGGTATTTGGCTTTATACACTCTTAGCCTGTTTTATGGAAACAGTTGAGTGTCAAGATCTTGCTGGAATTGACAAGTGAGGATCTATTAACCTAGAAATCTGCTAAACAAGCCAATCATGGTACACCCATCATATTGGCTTTAGACAATCAGGAGCAACTCAGAACAAAGATTCTTATTTTCATACACAGAGGTTTTCCCCACACCATGTTTAGCCTGTTGTCAGACTCCTATGTGTTTAAAGGACCTGCAGCCTCGAGATCCTTGTAGAAACCTGGTCTTCATCTGGATTTGGCTTTCTTTGCAATCAAGAAATTGGTTTGGAGGAACAGGAATTCTATGGGAAATAAGGTTTTAATATCTGTTCTTTTTGAAAACGGACCTCGGAGTCTGTTTCATCCCTACATGCAATTGTTGGCTTCTTCCTGGCGGTCGTGGCACACACCTTTAATCCTAGTGCCCAGGAGGCAGAGGGGGGAGGGGGAGGACTTCTGTGGGTTTGAGCCCAGCCTGGTCTATTAGAGCAAGTTTCAAGATAGCCAAGGCTACACAGAGAAAGCCTGTCTCTGGGTGGAGGTGGGGGTCAGGTTGGTGGTGTGGATCCATTAAAGTTTGTGTGTTTAAACTAGATAATTGGACAAACCACATTTTGCATAGACTGGAAAGACCCACCTCCAACCCTCTTCTCCCCCACCACCCTGCCCCAAGCTGATATTGGATCAGGAAGGTAACCTATAATTTATGATTAGGAATTATATGTCTCTAGCTAGGAATCTAGTTAGAAAAATGTCCATTTATCCAGGTTTAGTGCACAAGTTTGATCTAGATACATTATCATGAATGCCAGTTGAATCTCTCCTCATGATCTATATCTATATCTACATCTACATTTATATATCCTAGTCAAATGATCCTTCTTTGAAGGAGCCAGCTCTGGACAAACTAGGCAAAGTCTAGACTCAGGGATGAACTCAAAATATAATTTATTGGCTTTTAAGCCAGCAAGGTAATGGTAACTTTTTCAAGTTAAAAACCCACCCAGAAGCCGGGCAGTGGTGGCCCATGCTTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGTGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGCTACACAGGGGAAAAAAAACCAAAAAACAACCAACCAAACAAAAAAAAACCACCCAAGGCTGGAGGTTTAGGTCAATGGTAGAAGCCCTTGACTAATACAAGGGCCTAGGTTTGGGGCCCAGCATGGGAGTAGGGAAGGTGGTCTCCAAACATCCATTGGAAAGAGTACCAAGGGTATAGATATAAACACACACACAGGCATGTAAGTCTCTGTACAAATCCATGGGTCTTAGATTCACAGATAAGAAATCAGGGCAGCCTACTCAATGTTCTGATTCCAGTTCCTTCAGCTGAGCTCCCTCCAGAAGCTGCCATTCTTTTAAACCTGAAAGTTTATTGCTCCATGGACCCAGGGTGACACGTGTCCAAGTGGTCTCCCATAGGTCTTATTGCCTTCCACGTTGCTTTTTCCATGTAG
Seq C2 exon
CTTGAAGAGAAATCCGGACGGCTGCAGACACAGGAGCCTTTGCCCGCAGGATCTGAACAACTGGCTAACGGAAGCAACCCCACGGCAGCAGAAGATAAGCACACCAGGAGTCCACAGTGAGCTGGAGGAGACTCTTTCAGAAAGAAACCAAAATTCACTGGCTCACCGGAACTCCTGATGGCAAAACTGACCTATCAGAATGGTCACCTGTTTATCCAGAACCCCTGACTGGTGGCTTTGGCCTTAGCGATACTTTCATTCTGAGTGGATCTGCTTTTGTGGAGTGGGAAGGGTATGGATGTGTGGGTGTTATTTGAGGGGAGAAATAAAAAACAGTCTCCTGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-Abca4:NM_007378:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: