HsaINT1000123 @ hg38
Intron Retention
Gene
ENSG00000198691 | ABCA4
Description
ATP binding cassette subfamily A member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr1:93992837-93996195:-
Coord C1 exon
chr1:93996109-93996195
Coord A exon
chr1:93993243-93996108
Coord C2 exon
chr1:93992837-93993242
Length
2866 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CATGTGATCTCCTTCCACAGGAC
3' ss Score
11.42
Exon sequences
Seq C1 exon
GTGTTTGTAAATTTTGCTAAACAGCAGACTGAAAGTCATGACCTCCCTCTGCACCCTCGAGCTGCTGGAGCCAGTCGACAAGCCCAG
Seq A exon
GTACCCCTGCTGCTTATGCAGTCCACAGCTTGAGGCAGTTCCTTGGCTCAGAGCCCAGCTGGTTCACTGGGCTTGAGTTGCTCCAAGGCTCAGATATGCCTCCTACAGAGAGCCCCACCCACACCACGGTCCCTACCAAGTCCCCACCACATCCTCATCACATCCTTGCTAAGTCCCTGCCACTGTGTGTTCTGTGCTGAAGAACTTTTCATTCAGTAGTTGTAGGGGTTCCTATTGTAATCAGGAAACCATCTGGATAGCATGGGAGAGCATTTTTGAAAAGAACTTTCCCATGTTTTTGCTTACAGCAAAAAAGCTTGGATTTGGGGAATAAGGAGCAGAGAAGGTAATAGAGAATATTAGAATGTTTTGGGTGCTTGACATCTATGTCTGGACATGTGTTTGAGTTTCAAGGGAAGGGACTTAACTGGCACATCATTTCAGTGTCAGACACATTTGGTTAGATCAAGGAATAGCATCTGTTGTAGGAAGAGGGCTCTTTGTTCTTTATAAAAATTACAAGAAGATGGAGAAAGAAGCAATAGGAGGTATGTCTCCTGGCTTGTGATAACTCTTGGAATAGGTGCTTGTAGGTTCCTGCCCTGGCACAGTGCCCCATGTAAGGAGCACACCACCCAAGAAGGAGAGAGCTAGAGCAAGTACTGGAGGAGGCACCAGCATCCCAATGCCTTGGCTTAAGCCTGGGATTGTAGAGGGATGAATTAGCCACTCTCTTCTGACTTACCTGGAGAGTAAATCAAATCAAATCAAGAAGCAAGGATATGCAAAAACCTTATTTCCCCATAAAGTTTTTATTCTGCCCAGTTTCTGGATTGCAAGAAAAACCAAATACAGCTAATGATTGAAACACTGCTGTCTAAAGCAGTGCTTGTGATGAATTTTTTCCCTTCCTCTTGACCAGCAGAGACCTAATGGCTACTTGGCAAAACTGACTTTGTCTTCCCACCCCTTACCTGCCAGAGGGCCCAGAAATGCCTAAGGCTCCTTTAGTTACAGAAAGTTTGCTTTTACTGAGATCTTCCAGCCACTGATTCCCATTTATAGATCTGGTGATTGCTGTTGACATCAGTTGAAAATTATTTTTAAAAACCACTTGCAGTTGCAAATCCTTTTTATAACTCTGTAACTCAGAATATAGAATTGGGTAGCAAAATTGTTTCCCAGAATTACCAATGGTCTCCCCACCCCTGCCTGGCATGTTCCCTCTTAAAGGACTAATCCCACCACATCACCTCTGGGCCAGGCAGAACATCAGGGGTGCTGATGTTCTGTGATCTACAGCAGTTAATTCCAAACTTTTCTCCCTTATTGGATGAGATCATTTTTCTATTGTGTTTTTTACATTTTTGTTCACAAAGATTAGAAAACCTGCAACACACTTATTGGCATATTTTTCTGATAATTTTCATCCAAAACCTAATTCTGACTTTACAACATACTATCTTTACAAAGGTTTGCAAAAATTCTTTCATATAGCATTGTATATGTCTGTCATGAAATAATAGTAAGTATATTATTGTTTACATTATACCACTTCAAAATAATTTCCTTTAAAGTATTCTTCAAACAAGAAAAAGGCAATTTCTCTCAAGAAGTTTTAGAGAGAATTTACAACTTGCTCCTAAGCAAATGTGAGAACTTCAGGAGGTTCATCTGGCCATTGGCTTTACAACTCCAAATTGTGAGCCAGGACCACACAGATATTTCTCTAGAAATCAGCGTTTGCTTACCAAGAACATTTTTACTCTCCAAAGGACTCCATCCTGGAAAACATGTTTTGGGATAAGGTCTTATGCAATCTTATACTCTGTTATTAAAACCAGTGAGGGTCAAGGTGTTAATAGATTAAGTAGTGACAGATGATCAGACAACTTAGAAACATCCTAAATAGGTTAATAATTATGTGACCATCGCATGTGCATTCCCAAATTAGGAACAACTCAGATCAATTTCTAATCCTTATTCTTACACTGTTCCAGTTCCCCCATATAACTCGTATCTTTGTGTTAGTTTCAGAAGTTTCTGAAGTACCCTCAGCCTTGATGGGGATCCTCGCACCACCTCAAATCCTGTTCTCAGCCCTAAGAACTGTGTTAGTCATCCTCTTAAGAGGATGTGTGATTTTAAATCAGATAATGGGATAAACCACATTTCGTCTAGACTGGTCAGGCCTTTGTCCAGTCCCCTCCTCGCCCACACTACCCCAGCTCCACAGCGGGCATTGGTTCAGGAATTCAACCCACACTTTATAACTGGAGACAGTATCTCTCCAGTTAAAAAGGTCACCTTGGTGTCCGCTTCTCAAGGAACATGGACATCTTTATTAATCAAAGCCCAAGCTTTGATCTGGAGCCTAATATCCTGCACTCCAGCTCTCATCTCTCCCCTCCCCCAGTCACACTTTCATGCTTCCCAGAGCCACCCCTACAGGAAGTGGTCAAGGGAATTCTATACCTCAGGGCTGACCTAAATTAGGATTTCTTGGCTTTTAAGATAATGGTAACTTTCTTAAGCTAAAAAAGCCCCAAAAGACCCTGTAAGAGCCCTTGGAAACAGCACCATGGGTGTAGCTTCCCCCCAGGATGTAAGCATGTATGCACACATCTCGTATGTGTGTCTTTGTAACAAATGCCTGGATCTTAGTACCAGGGAGACCTGATTCATAGATTTCATAGAGAAGGAGAGAAAGATGGCCCATAACCTGGGTGATCTGACAGAATCACAGTGCCCTCAGCTGAGTGCCCTTCAGAAATTGATTGACAACTGTTTAGCTTTTGAAATCTAAAAGTAGTACAGCATCTCAGAAAACCAAGATGACGCGAGTCCATGTGATCTCCTTCCACAG
Seq C2 exon
GACTGATCTTTCACACCGCTCGTTCCTGCAGCCAGAAAGGAACTCTGGGCAGCTGGAGGCGCAGGAGCCTGTGCCCATATGGTCATCCAAATGGACTGGCCAGCGTAAATGACCCCACTGCAGCAGAAAACAAACACACGAGGAGCATGCAGCGAATTCAGAAAGAGGTCTTTCAGAAGGAAACCGAAACTGACTTGCTCACCTGGAACACCTGATGGTGAAACCAAACAAATACAAAATCCTTCTCCAGACCCCAGAACTAGAAACCCCGGGCCATCCCACTAGCAGCTTTGGCCTCCATATTGCTCTCATTTCAAGCAGATCTGCTTTTCTGCATGTTTGTCTGTGTGTCTGCGTTGTGTGTGATTTTCATGGAAAAATAAAATGCAAATGCACTCATCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198691:ENST00000370225:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains