HsaINT0012820 @ hg19
Intron Retention
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140500096-140507458:+
Coord C1 exon
chr9:140500096-140500287
Coord A exon
chr9:140500288-140507347
Coord C2 exon
chr9:140507348-140507458
Length
7060 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGCAGCCATCCCCTTTGCAGCCA
3' ss Score
7.89
Exon sequences
Seq C1 exon
GCCGGGCCTCGGAGCCGGGACTCGCGGGCGGCGGGCGGGGGCGTCGCTGCGCGGCTGGCCGGTGAGGCCGCGGCATGGGGCGAGTGCAGCTCTTCGAGATCAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGGGAGCCGTTGGCTGGGACCGTGCGCGTGCGCCTGGGGGCACCGCTGCCGTTCCGAG
Seq A exon
GTGGGCGCGGGTCCTCGGGGAGGGCCTTTGGCCGCACCTGCGCGGGGCCAGGGCTCCCGGAAGCGGCTGCCGTCGCCTGGCCCCGGGTTGGGCCCGCGGAGTCGCTGTCTTCGCCGCCCGGGACTGCTGGGAAGCGGGCTCGGCGGCGCCGGGGAGGTCCGGGCGGCGCCGCCCTTCCGCGTCTGCCCTTCCTGCCCTCTCGCCGAGGGGCGGCGGGGTCCCGGCGGGGCCTGAAGCGGGTCCACTGTGGAGGACGCCCTGAGCGCGGGCGCACGCAGGCCTGCGACCCTCCCCGTCCGCGCTCGCACCTGCTGGGCTCCTTCCCGCACCCTGGCTCCCGGCGCAGGCGCTCCCGCTGCAGAGCCGCTCCTGGCGCGGGCGTGCGGTCCCGGCGGGGTGCAGACACCTGCTGCGGCTCCCTGCGCCCCCTGCCACCCGCCAGCAGGCCTCGCCGGCCCCCCGCCGAGGTGGACGCCTGGGCCTCGGGGACTGGGTATCGGGTTGCTGCAGTGGCCGCTGGCAGGGCGCCCTGGAGGTGAGGGCCGGCCCGCGAGGTGAGGCTGCCTCTGCCCGGCCCTTGGCTGTGAGTGCCGCGTCCCTGCCGGGGACTTCTCTACCTTGGCCTCCTGTGGGAACCACCTGGGCTGCTTGGCCTGTGCCACAGCCCCTGGACTTGCCGCTGGACCTTGACCGCTGGGCCCGCGCGTGGGTAACAGCACCGATTTTGTGCCTGCTGAGAACCCACAGTCTCTGTTCTGTCCTCTCAGCCTCCTGGGACAGGTGATGGTGCTGTGGCCCTGACCCTGCACCGCCTGAGGCTGTGGGGCCTCGGAAGAAGCCGGGTGGTAGGTGCTTCTGTCAGGCTCCTGGCCCCACTGGGCCTCCTGGGATGACCCCACAGCCTCCCTTCCTCTGTCCCAACCTTGAGTTTGGGGTCTGGGTGGGGGCAGGTGTGGCCGTGGCAGGGCAGAGATAGCACACACATCTCTTGGGTACAGGTGTGGTGTGTGGTGAGGCCGGCTGGATCCTGGTTGAGGGCTGTGCAGGACCCTGTCGTCCTTCCCCTGGCGTGGCCTGGGGTGAGCAGGCCATTGCTTACCACAGGGAAGGGACGGCCCCGCGGTGCGTGACTGGCCTGGGTGTGCAGGCTCCCCTGGCCTCCGGGTGGACGTGGTGGGTGGGTTGAATGCTCACGCCTGTAATCCCAGCACTTTGGGCAGCTGGCCCAAGAGCCGAGGGAGCACTGGCTGATGGTCCTACCTCACAGAGGCTGGTCTGAATGAGGGAGAAAAAGGAGGGTCGTGAGCTAAGGAGTAGGAGATGGGCCCTGATGGGCCAGAGAGCACATGATTCAGGCTGCTGCAAGTGAGGTGGGAGGGTGTACCGGGGCCCCCGGGGGTTTCCCCCAGCCCTGCCTGGGATGGGAACAGAAGGACCATGGTTTCTTTTCCTCATTCAGAGGATGCTTGTCAATCCTGCTAGGAGCCAGTAGGGAGGCCCTCAGCCCCCAGGAGGACAGCAGCCCTGCCTGGGCCCCAGAGCTTGCTCACTTACTCTGCCGATGAGTGTCGGTGACAGTCAGCACCCAGCCGTGAGGACACCGGCTGTCTAAAGGGCTGACGCGGAGGGAGGCCTGGGAGGGAGCAGTTTTCTGGAGCTCAGGCTGGCCCAGTCCAGGGCTGGGGTTCAGGCAGGACCACTTCTTGTTCTGCTGTTACTGGGATGGGCGACCAGGGCCGACAGTGGTTCTCGGAGCACTCATGGTGGGCCCGATGCAATTCTCTCCACGTGCCACGGGCCAGCCTCAGTTAACCCTCAGCGCCCTGGCAAGTGGCACGGTTGTTACTCTCATGATACAGATTTGGAAACAGGACTGGGGGAGTGGCTTACAGGTCACAGCTTCTGTGGCAGGCGTGAGTCCTTTGGGATGAGGATGAGGAGTGGGTGGGTCTTCATGGTCCAAGTGCAGGTGGTGCAAGGGAGGGGCTGCTGAACAGGTGGGAGCCCCAGCTGGAGAAGAAAGTTCCAGTGGTCACTTGAGAACGCAGCCCAGTCATGATCTTCCTTAGAGTCAGAGAGGCCTGCAGCCTCCAGCAGCTTGTCCTTGCTTGTGCATCTGAACACAGGAAACATTTTTTATTTTTATTTTTTTAATTTATTTTTTCGAGACGGAGTCTCCCTCTGTCGCCCAGGCTGGAGTGTGCCGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCCGGTTCACGCCATTCTCCTGCCTCAGCCTCCTTAAGAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTGTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGAGGGTCTGGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCAGGAAACATTTTTTAAACCTGCATGGGGGAGGAGGGACAGGGCTTGCAGGGCCCCTGCAAAGAGGTGCAACGTTCAAGTCCAGAAGGCGGAAGAAGTCACACTCTGACTAGGGGACTGCCACTGAGCCACTCAGTCCTGCAGCCAAGCCCTGCCTGGTGGCTTTCCTGTTGCGAAAGGCTCGGTTCCCTTCAGCGTGTTCTGCCATCACAAGCAGTCTGCAAGCTGGAAAGAAGAGGGAGCGGGGTCGTATGCCGCCAGCAGCAGGGAGACCCCTCACAATGGACCCCATGTATTGCTCTGGCTTCTCCGTGGGCAGAACTGCATCCTGTGGTCCTGCCTGATTCGATGATTTGAAAAGGCAGAAACATGGCCGCTGCCATTGGCCTGGCCAGTGAAAACGGGCTCCCTGGGAAATTCACCCAGCCTGACCTGAAGCAGTTGCTGAGAGGCAGAGGAGCAGCTCCAGGTGTTTTGGCAGGGAAGCAGCTGGCAGCTGTGCGGGAGCCCCTTGCCTCCCGTGTTCTTACTGAGGAGTGTGTGGGGCAGCTCGGGACAGGTTTCACTTTGGACAGTGGTTGGAGGCTGCTTACTCTGGCAGAGTCATCTCAAAGAGCCTTGGTGTATGTGCAAAACGGGGCCATCTGCATGGGCGTTGGGAAGATCACAGAACCTGGACCCTTAGGATGACCCAAGGGTCAGTTGCATACTGTTTGTTTTTGTGGAGTCAATGTCCCATGACGGTTTTCGCGATGCTTTGCTAGTAGGAGCAGTGGCGTGTGAGGCTCCCGGTTAAATACCATGAGATTCTAAGCGGAATTCTGGGTCTCCTGGTATGCACAGGTAAAATTACAGTAGACCTGTCCCACTCTTTGCCAGAACCTCGTACTTGTCTGCAGTTTGACTGGAATAAGGGGTGTTTGTGTTCCACCTCCCTCCAACGTGTGTTGAGACATTTATTTATTTATTTATTTATTTACGTTGCTCTTGTTACCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTGCTCACCGCAACCTCTGCCTCCCTGGTTCAAGTGATTCTTCTGCCTCAGACTCCCGAGTAGCTGGGACTACAGGCACGCGCCACCAGGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCGTGTTGGTCAGGCGGGCCTGGAACTCCGAACCTCAGGTGATCCGCCCGCCTCAGCCTCTTAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCCCCAAGACATTGATTTTATTTGAGATGAGGTCTCACTTTGTCACCCAGACTGGAGTGCAGTGGTACAATCTTGGCTCACTGCAACTCCTTCCTCCGGGGCTCCCACCACAGCCTCCTGAGTGACTGGGACCAGGGGCACGCGCCACCACACCCAGCTAATCTTTGGTAGTTTTGGTAGAGATGGGGTTTCACCGTGTTACCTAGGCTGCTGTCACACTTCTGGCCTCAAGCAATCCGCTCGCCTTGGCCCCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCCAGCTGTGTCGAGACATTTAATATTTGTCAATCTGATGGATTGAAATGGTAGGTCATTTGGGCTTTCCCTGCAAGCTCCACCTTCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGGTTTCACCGTGTCAGCCAGGATGATCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCACAGTGCTGGGATTACAGGCTGAGCCACTGCGCCCGGCCGGGTTTTCTGTAATTTCTAGTGAGGTTGGACATCTGTTCCAGTTACCTACTGCTACGTAAAAGTCGCGGTCACCTCAAGTCAGACACCATTCTTAAAACAGTTAACACAACCATTTTATTATATCTCACAGCGTTGTGGGTTAGGAATCTGGACAGTGAGGGCAGGGTTAATCTTCAGTTCTGTGCCACCAGCTGGGATCACTTGAGGGTGCTTGGCTGGCATACGGGTTAGTCTGGGGACCACTGCCCCCTTTCCGGCATCCTCTGTGGGTTCCAGCATTTTTCTTTTTTTTTTCTTTTTGAGATGAAGTCTCGCTCTGTCACCCAGGCTAAAGTGCATTTGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTTAAGTGATCCTCATGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTTTTTTGAGATGGAGTTTCACTCTTGTTGCTCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTGGTAGCTGGGATTACAGGCATGTGCCACCATGCCCAGCTAATTTCGTATTTCTAGTAGAGATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCGGCCTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTCAGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCCTTGGCCTCCCACAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCTGGGTCCCAGCATTTGCGGGATTCAAGGTGGGGATGTGCAGTCTGTCAGGAGTGTTAAAAGCACGGCAGCATTTCCAGTCCCCAGGCCTCCTCTCCTTGCTTCAGCCACGCCCACCCTCCTCTGTGCCTGCTCATGCCCATGTGCTTCTGTTGGGCTGTCTGCTGGTCCACAGGAGGATTACTGGTGTTCCGGATTTTCAGCATGAACACAGTATGGGGTCTGGCCCGAGGAGGGCCTGGCTAACAGAGCATGGATTCAAAATCAGAGCAGAGCTGGGTACCGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGTGGATTGCTTGAGCTTAGGAGTTTGAGACCAGCCTGGACAGCATGGCAAAACCCTGTCTCTATAAGAAAAACAAAAAACAAAAAACAAAACCCAGGTGTGGTGGCACGTGCCTGTAGTCCTAGCTACTTGCGGGGCTGAGATGGGTGGATCGCTTGAACACAGGAGGTTAAGGCTGCAGTGAGCCGAGATCGTGCCACTGCACACTAGCCTGGGCGGCGGGAGTGAGACCGTGTCTCAAAAACAACAACAACAACAACAACAACAAAAAAACAAAAAATGGACCGAGGTTGGGGTGGCAAGGCTGGGCTGGAATGGAGGCTGAGGACAGGCCCTGGCAGCGCCCGGGGGTAGAGGGCGTGCAGCAGGAAGCAAGGGCCACCCTCAGGGATGGGGGACTGGGCCTGGCAGCTGCCGAGGGGTAGGCAGGATGCATGTGGAGAGCCACGTGGGGCTGCGGCTGAGCCAAGGATTGTGAGAGGAATCCTGCTGCTCTGGGTGGCAGGCAGAAGGCCTGGGCCACAGGTGGGGCCTGCTGGGGAGACCACAGGTGAGGCAGGTATGGCTGACCCTGGGCGCTCGGCACACCGGTACTCCTCCTGCCTGGCTGCTCCCTCAGCAGGTGTCAGAGTCTGAGTCACCTTTTCCTCACGTGACCCCCACCAGGACCAGGCAGGGAGGTGGCCATCTTTGGCCCTGACTCAGCCCTGCAGGGAGAAGAGGGGCTGGAGGTGCAGGTGGCCTGCCACTGTCTCCCCCAACCCCTGCCCACCTGGGTCTTGTGCTGTGTGTACTTCTGCTGCGTCTGTCCTCCCTTGTGACCAGCTTCTGCTGGACCTGATTGTCCAGCCATGATCTTCTGATCATCATGGTTTCTGGACACACATCTGTTGGACTAAGGAATTTGTGTTCCTGGCCACAGAACAGTGCCACCTCTGCCTCAAGCAGTTCCTGGTCTGGGCACTCCCCCAGGGAGGCCGGAGAGGACTGAGCCGTCTCCTGATGCAGAAAGTCAGCCCCGCTGGGCAGTGCTCGCCCAGGAAGTAGGGCCCCACCCAACGGTGTGCTGACTGTGGAACACTGTGTCTGCCTAGGCGGGTCTGGCCACATTCCTGCAGCATGATGGTTGGCAGTTAGCTTCCTGGAGTGTGGACGGGTCCTTCCCTGCCTGACTGACTTGTCCACAGGGCAGCAAGAAGATGCGCCCCTTGGTGTGTCCCGAGTGTCTCCTGTAGGCAGCTGAGCTTTCGCAGGTCTGGCTGGGAGCCAAGGTTACCAATCTGGGGGGTAACCCAGCCATCATCTGGATGAGCGTTGGGGTCTTTCTGCTCTGGATTGCAGGGCAGACGTCGTTTTGTGCTGGTCAGGCCCCTCGCCTGCCTGATTCCCTTGGAGCCCCCCAAGACAGGAGATGGGCAGATGTCCTCTGAAGTGGCATGGGCTGCTTGCTCACTGGCCTTCCCAGGACCCTGCCCAGGTGGTGCTGCTTGGCCCCAGGTCGAATTCCTGTGCTGGCAGCAAGCAGGGGCCTGGGCCGTCGGCTGGCTGGGGCTCATGCAGCCATCCCCTTTGCAG
Seq C2 exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-ARRDC1:NM_152285:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
NA
C2:
PF0033924=Arrestin_N=PD(58.0=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)