MmuINT0019319 @ mm9
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24783249-24790801:-
Coord C1 exon
chr2:24790548-24790801
Coord A exon
chr2:24783360-24790547
Coord C2 exon
chr2:24783249-24783359
Length
7188 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGGCACCCTTCCCCTTACAGCTA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GGGGGGGCAGCAGCTAGTATTCCGGTCCAGGCGGGTCCTGCGGCCTGGGCGTGTCCTCTGTCGGGGAGGGGAAGAGGGGCGGGCCTCGAAGCCACTACTCTAGCAGGCGTCAGACCGCGGCGCGGGAGACCGCGGTATGGGGAGGGTGCAGCTCTTCGAGATCCGCCTGAGTCAGGGCCGCGTCGTCTACGGTCCTGGGGAGCCGCTGGCTGGGACCGTGCACTTGCGCCTGGGAGCGCCACTGCCCTTCCGAG
Seq A exon
GTGGGCGCGGGGTCCCCTCCGGGAAGTGGGTAGACGCGTTCTTACCTGCGGTGGGGCGGGGCTCTCGGGAACTGTGCGGTCAGTGGGCTCTGCGACTGGGTTCTTAGTCTCCAGGAAGCCCCGGGTTACGACGGAACCGCGGGCACCAGGAACAGGCAGTTCTGGGAGGCTCACGGAGGGCAGGGCGGGGCGGGCAGCTCGGTGGCCCAGTTCTTCCGCATCTGCCCCATCCTGTGCTCTCCGCCTAAGAGGCCAGAGTCTGTGCAAGGGCCTAAGTGCTTGTTCATTCACTATGCCCAGGCAACCCTGGCAGTAGAAGCATGCGGGCCTTCAGTCTTCCCTTGTTCAGTTGTCCAAGGTCCGCTGCACTGTGCACCTGCTGGGCCCCCACCTGGAACCTAATGTGCTCTAGGACCTCTCATTTCCTTGTCTCCAGACTCCTATGCAGGACCTTCTTCAAAGACAGTTCTGGTCCAAGTGGGCAGGTTCCCACCAGGATCCACAGGGTACCTTCTTGCTTTCAGCTTAAAGATTGTAATTGCTGGCAAGGGGCCCTGTTCCACCGGGCAATCCCCTCGCGCTCCTTTCCTAAGGCCTTGTGGGAGCTGAGCTGAGTCCTCTGCTGATGCATAGATCTGAGACTGTAGGGCTGATGGGGATCAGGTTGCTGCTTTGCTATTGCCAGGGCACTCTCAGGTGCAGCCTCGTTGGTGCTGGATCCACGAATAGAGGGCCCTGTGTGGGATTTGATGACTGAACTCCCTGGGACCAGGTGGGCACTGTTGTGGCCTCTACCTGGCACCGATTGCAAGATTATATGGATGTCTTTGCTTGGTGCTCTTTTATTTTTGTCTTCTTTGAGAACTGCGTGGCTGCATGGCCAAACCACAGTTGTCCACACACACTAATGGTGTCTGCTGAGGACGGAGAGCTATTCTCCTCAGCCATTCTAGGCCTCAGATGAACAGCTGCCTGGACCTGGACTTGGTGTTTGTTGTCCAGGTCGAGAAGGAATCTGGATTGTATGTGCCTGTCAAGCCCTGATCTTGTCGAGGCTTCTGGTCATGATCGCATTACCTATCTTTATTTAGAGTATGTAGTCTGGGTGAAAGCTGCTGTTGATTTTGTAGAGGCATACAGCATGATAGGTCAGCTCCTCCTGGATCTAAGAAAGGTACAAGAAGTGTACATTGGCTGAGGGGAACATGGTACAGGCCACAGGCTCGTGAGCTTGAGTGATACAACAGAGAGAGGTCCTATTTAGAACTAGCCATGCAGTTTTTCTTTTCTGTTATTTTCTCCTGACAAGACATGGGGTGAACAGGTTAGGCTATTGCCAAATACAGTGTAAGGATATCTTCTGGCTTGTAGCAGTTAGAGAGTAAATGGACAGCTGACCTGATAGGGGCCAAGAGAGCCCCCATGATGGTCCCAACTGCAGAAAGTGCCCAGGATCATGGGCTGGGGCTGGAAGGTGGATTTATATTGCTGGCAGTTGAGATTGTATGTGTAGAGGCCACTCTGGAAATTCCCTCAGTCCTGCTTGGGATGGAGATAACCATGGTTCTTATATTTTCTTTCATTCAAAGGATACTTGCTGCACTTCTGCTAGACCCAGTAGAAGAGCCCCACCTCCCCACCCCTTCACTACCTTAGGATTTTCAGTTTTGGTCATGGGGTACTTGTCTAAGGACTGACAATGGTTCAGTCCCATCTGAGAGGATACTAGCCGCCTCAGAGGTGCTATGGATTGCAGCTGCCCCAGGACAGCAGTAGGGCCTACTGTATTTTCCTTATGGCTCTCCATACCCCAATTCTGGATAGATGCTTTCTGCTTGCTTTTCTTCTTCTAACTCTTGGTTCTGGGAATTTAACTTAGAGCATGCTCAATAAGTGTACTACTGAGCTAAACTCCCAGCCCTCTTCTTTTCTTTCTTTTTTGTTTGTTTGTTTGTGGGTTTTTTTTTTAAAGATTTATTTATTTATTATATATGAGTACACCTTAGCTGTCTTTAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGGTTTTTGGTTTTTTGTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTAGAACTCATTCTGTAGATCAGGCTGGTCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATACACCACCACTACTTTGGCCCGCCCGCCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTATTTTGAGACAGTGTTTCTCTGTATAGCTCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGTCACTACGCCCAGCTAAAGGTACTTCTTTTTTGGGGGTGGGGTGGGTTGTTTTTTTTTTTTTTTTTTGCAGGGGTTGGGGGGGGTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTCAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCCGGCTTACACAGCATCTTTCTATGCTACCCAGACTGATCTCAAACTTGCAATCCTGACACAGGCTTCTGAGTGTCGATGCATGGATGCACCTCCAATCCTCGGTCTCCTTATTTTATGTATGTGAGTACCTTGGAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGATTGCTGGGAATTGAAGTTAGGACCTCTGGAAGAGCACTCAGTGTTCTTAACCACCAAGCCATCTCTCCAGCTCTGTTTTTCTTTTTTAGACTTATTCATTTTATTTTATGTGTGTATATGTTTTGTCTGCATATGTGTCTGTACACTACTTGCTTATGTGCCCTAGAGTACAGAAGAGGGCATCAAACACTCTTGACCTGGAGTTAAAGGTGGTTCTGGGTTCTGGGAATGGAATTTGGGTTTTCTGCAAGAGGAACAAGTGCACTTAACTCCCAAGCTCTCAGGGCTGGGAAGATGGCTCAGTGGTTAAGGGCACTGTCTGCCCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAAATACATGGTGGCTCACAACCATTTGTAATGGATCTGATGCCCTCTTCTGGTGTTTGAAGACAGCTACAGTGTACTCATGTACATACAACAAATAATCTTTAAAAACAACCCCAAAAATACTCCTAAGCTCTCTCCAGTTTGGCTCTGTTTTTCATAGAATAGCTGTGGTTTCACAGGACCCCAGAGGTAGCAACCCTTGTTGGTTTATGGTACAATTGGAAGCAAAACAAGCACAGATTTAATGACAGGGTGTGTTAGCTGGTGGGGATGGTCAGGTTCAAGATCTTTGGAACCAGAAGAAGAATGGAAATGTCTTCATTATCATGGTGCATGGTAAGGAACTGCTGGAAGGTAGAAGCATCCATGAGGGAAGAAAGTGCCAGACATCTCTGTGGAACAAAACACACACCATGATTTTCTTTAGAAAACCAGAGCTAGAGCCGGGCGTGGTGGTGCATGCCTTTAATCCCAGCACCCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCACGGCTACACAGAGAAACCCTATCTCGAAAAACCAAAAGAAAAAGAAAAGGGGGGGGGGGAGAAAAACCAAAAACAACAACAACAACAAAAAACCTTAAAGACAAAGAAAATAAAAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAGCAAAGCAGAGCTGCTACGAGATGGAGCACGCCTTCCCAGCACTTTGGGGAATAGAGGCAGGTGGATCTCTGTGAGTTCAAGGCCAGCCTGGTGTACAGAGTGAGTTCCAGAATAGCTAGTGCTACACAGAGAAACCCTGTCTCAAAAACAAAACAAAACAAAACAAAATAGAAAAAAAAAAAAAAGGAAAAAAAAAGCAGCCTCCAGTCTCTAGTGGTGAACACCTGCTAGTTCGGTGGTCCCTAGTCAATTCAGTGAGTGGTGACTGCCTTTTATTATAGTTAGGAACACTGTTAGGAAACGTTTTTTATACTTAGATGGCACCTTTAGGTATAGGTTGTTCTGTAGGCTGTATCGTGGTGCTCTGTAGTGGAGGATTTGGTAGAATACACTTAGCCTGCTTTCCTGGCTATGCTGCAGGGTATGAGCCTGAGAGGGCCGTGGTTGCTTCCCAGATACCTTTGCATGAGAGTGGAGAGGTAGGACAGTGGAGATAGTACTGAGAAGCAGCATAACATTATTTAAAAAGAGCCATGTCTAGTGGCCAGCAGCAGCAGCAGAGAGCCCATCTAGTATGCTCAGAACTCCCTCATTTCCACGATTTATGTAGCTTATGTAGTAGTACATTGTTTTTCCTGCTCCAGTGATTTGAGAAGGTACATACTTGGCTGCTGGCATTGTCCTTGGCCAGTGTACATGGTTCTTGGAGGAATTTTCTGGAGAAATTTTTACACTTGGATTGTGACACTACTGAGGCAAAGGAGAAGCCCCAAATGTTTTCTTGGGGGAAGCAGAACACTTGGTGTTTGCAAGCCCTTTTCCACAGTCATTTCTCACTAGAGAGTAAGTGACACAGGATGTGTTCAGCTCAGGGGCTGGAGGATGGCCACACTGGCAGGGTGTTCCTAAAAGCCATGTAGTATGGGAAATGCCTGGCATTGGGAAGATCAGAGGGCGATCCCCCTACTTCCAGTTTGGATGCGGCTTGTTTTCCTGGAATCTGGTGGTCTCATACTTCTTTTCCTGAACTGTAGAAGGTCCAGACTGGGTGCTTGATTGTTATTCTGAGCAGTGCTGTGAGAGACTCCTGATGAAGCAGTGTAGGACTGGAGACCTGATAGGTGTCCTGGCATGTACAGGTGCAAACAGAAGAAGCTGGCCTTGTGTCACTGTGTGACTTCTCCATCTCCCTCCCCAACACCGATCAAAGCACTTATCGGTTGTCATTCTGAGTAGTAAACATGTACGTCACCTGGGTTTCCCCTGATTTCTAGTGTGGCTGGGTATTGGTTCCAGTTGTCTAGTGCTACAAAAGGTCATTCAAATAACAAACCGCCCCTGAACTAAACAGCGAAAGCAACCAGTTTGCTATTGCTCCTACATTGAGAATGAAGAATTTGAATAGCACTGTGCCATTCACTGTAGGCACCCTCATAGCACTATGGCAGCATCTGGCCTAAACTGAGACCCCCAGACTTTTTTTGTATCTAATGTGGGGCCGATCAGCCTTTTGGACATGTTTCCATTGTGAAGCATCTTGAACCCTCTAGCAGATCTTTGAACCTCTGCTTACCCTGTCATCTCAAGAACTATTTCCTGGCCTATAGGTGCCACTAGTGTTCAGATTCCAGGGTGAGACAACTTGAGGATTTGTCGTCAGAGGTCATGGCAGGCGTGTGTGTATTTCAAACCAGGTTGGAGGTTAGAGTTGTGAGGTTGGGCTGAAATGGAGGGTGACAGACAGACATTGGCACTTCCAAGGACATAGAGTAGCACAGCAGGAATGCAGGAAGTCTCAAGAGTAGGAACAGGCATTGGCAGCCATCAGGTGAGGGAGTGTGTTTGCAAGTTAGCATTTGCTCTAGGCTCCACCCAACAGTTACCTAGCAACAGCCAGGTAGGCCTGGCTTGCTATAAAAAGGACTGTTTGGCCTCTCTTCTCTCTCTGACCCCTTTCTCCCTTCCTCTTCCACCTGTTTACAGCTGGTGTCCCCCCCCTCTCTCTCTCTCCCCCTTTCTCTCCCTCTCCCTCCCTCCCTCCCTCCCCCTCCACTTCTCTGCCTCTACTCCCTTCTCAACCCCTATTCTATACTAGACCCATCCCATGGCAGGTACCTCAGGGGGAGGGGTGCCTCAGTATGGGCCCGCTGAGGCACCTTCTCCAATCGGTACCATACTGCCACACTTTACAAAACATATCAGAGTGCACCTGTGGAGAGCTGTGTGGGTTTGAGAATGAGCCAAAGATTTAGAGGATAAAGTTTATGGGGTGACCAACAGGATGCCCGGACCATAATAGAGGGAGACTATCCGTGAGGCAGGTGCGATCAACTTCTAGGTGGTTGGATTTCTTTGTTCTTGCTTAGCGGCTTTGTCACAAAGATGAAGAGTTTGAATAATCCTCCCCTCCTGTGACCCTGTCAAGTAAGTCTGGGAAGAGGGCTGAAACCATGACCCAACTCTGCAGGAAGCAGGGTGTTACTTCAGGGTGCCGCTCTTGGCTCCCACCTATATCTTGCTTGAGCTGCCTCGCCTGTGACCAGTTTTAGCTGTGCTCTCTCACTCAGCTGCAGCTACCTGAGCACAGTAGGGCCAGGTTGTATTTGTTAAACAGGAAAGTGAGCTCTTGTCTCTAGTGGTTCCTGCTCTGGGATACTCCCACAGATGGGGGAGGACCAACTACCTCATGGTGCAGAACCTCAGCCTCCTAGGCACTACTGTTCAGGAAGGAAATCAGGATTTGCCTTCCAGGGCTGGATTGTTGACTCACTCAGACAGGTCTGACTGCATTCCTGCAGGGACAGGGCTGGCATTAGCTTTCAAGAGACTGAAGGGGCATCTCCAGACCAAACTGATTTGCATCATGAAAAAAGGGTGGCTGGGTTTTTATAGGTCTGGCTAGAGGCTGATTTAACCAATTTGAGGGTAACTCAGGGATTATCTAGGAGAATACAGGCTTCCCACCGTGTCTGCAGGGAGGATGAAACACTGCCTATCAGTTTCCTTACCAGCCTGGTGCCCTGGCAGAACACCAAGACTGGGGATGGCCAGGAGGTACTCTTGGGAAGATGACCCGGCTGCTTGGCCTTCGGCCATGGAGGCTGCTTGACCTGTGGGCACTTTCAGACCTACATGAGATCCTGTGCTGGGGACAGGGAAGAGCCATGCCATCAGCTGGCATAAGCTTATGGCACCCTTCCCCTTACAG
Seq C2 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCACCAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTGTCACTGGCTGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-Arrdc1:NR_027876:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=WD(100=85.0),PF0033924=Arrestin_N=PU(13.0=7.5)
A:
NA
C2:
PF0033924=Arrestin_N=PU(23.5=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: