RnoINT0021391 @ rn6
Intron Retention
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2132286-2136936:-
Coord C1 exon
chr3:2136805-2136936
Coord A exon
chr3:2132397-2136804
Coord C2 exon
chr3:2132286-2132396
Length
4408 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGACACCCTTCCCCTTACAGCTA
3' ss Score
11.55
Exon sequences
Seq C1 exon
CGGGAGACCGCGGTATGGGGAGGGTGCAGCTCTTCGAGATCCGCCTGAGTCAGGGCCGCGTCGTCTACAGTCCTGGGGAGCCGCTGGCTGGGGCCGTGCACTTGCGCCTGGGAGCGCCACTACCCTTCCGAG
Seq A exon
GTGGGCGCGGGATCGCTTCGGGGGAAGTGGGTAGACGCGTTCTTACCTGCGGTGGGGCGGGGCTCTCGGAAACCGTGCGGTCAGTGGGCTCTGAGACTGGATTCTCAGTCTCCAGGAAGCCCCGGGTTACGACGGAACCGCGGGCGCCAGGGACAGGCTGTTCTAGGAGGCCCACAGAGGGCAGGGTGGGGCAGACAGCTCGGTGGCCCAGTCCTTCCGCATCTGTCCCGTCCTGTGCTCTCCGCCTAGGCGGCCAGAAGTCTGTGCGAGGGCCTAAGTGCTTGTTCACTATACTCAGGCAACCCTGGCGGTAGAAGCATGCAGGCCTTTAGTCTTCCCTTATTCAGTTGTCCAAGGTCCAAGGCACTTTACACCTGCTGGGTCCCTACCGGGAACCTAGTGTGCTCTGGGTCCTCTCTTTTCCTTGTCTCCAGGCTCTTATGCAGTACTTTCTTCAAAGACAGTTCTGGTCCAAGTGTGCAGGTTTCTATCAGGATCCACCTTCTTGCTTTCAGCTTAAAGATTATAGTTGCTGGCAAGGGGCCCTGTTCCACCGGGCAATCCCCTTTCTCCTGTCCTAAGGCCTTATGGGAGCTGAGCTGAGACCTTTGCTGATGCATAGATCTGAGACTGGGACTGGGGATCAGGTTGCTGCTTTGCCATTGACAGGGCATTCTCAGGTGCAGGCTCCTTGGTGCTGGATCCACGAATAGGGGGCCCTGTATGGGATTTGATGACTGAGCTCTCTGGGGTCAGTGGGCACTGTTGTGGCCTCTGTCTGGCACTGACTGCAAGATTATGTGGGTGTCCCTTACTCCTACACTCTCTCAGCCTACTCTGTTTTTCGTAGATCAGCTGTTTTTACAGGACCCCAAGAGGTAGCAACCCTTGTTAGTGTGTAGTACAGTTGGAAGCAGGACGAGCACAGATTTAATGGTAGAATGTATTATCTGGTGGGGATGGTCAGGTTCAAGATCTTTGGAACTGAAAGAATGGAAAGGTCTTCATTATCGTGGCCCATGGTAAGAAGCTGCTGGAAGCTAGAAGTACCAACGAGGGAAGAAGTGTCTCTGTAGAACAAAATACACACCATGATTTTCTTTAGAAAACCAGAGCTGCTATAAGGTGGAGCATGCCTTCAATCCCAGCACTTTGGGAGGCAGGTGCAGGTGGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGCTAGTTCCAGAATACCTAGGGCTACACAGAGAAACCCTGTCTCAAAAACAAAACAGCAACAGAAGAGCAGCCTCCAGTCTCCAACGGTGAACACCTGCTAGTTTGGTGGCTCCTAGTCAATTCGGTGAGTGGTGGCTGCCTTTTATTATAGCTAGAACACTGTTAGGAAGTGTACTTTATACTCGAATGACACCTTAAGGTATATATTGTTCTGTAGGCTGCCACTTGATGCTCTGTAGATGAGGATTTGCTAGAATACACTTGCCCTGGTTTCCTGGTTATGCTATGTTGCAAGGTATGAGAGGACCATGGTTGCTTCCCAGATACCTTTGCATGAGAGTGGAGGGGTAGGACTGTAGAGAGATTACTGAAAAGCAGCATAACATTATTTTAAAAGAGCCATGTCCAGTGGCTTGCAGCAACAGCAGTAGGAAGAGGAGCAGCAGAAGCAGAGTGACCACCTAGTATTCTCAGAACTCCCTCATTTCTCACGATTTATGTAGCCTTATGTAGTGCATGGTTTTTCTGCTCCAGTGATTGGAGAAGGTACATGCCTGGCTGCTGGCATTGTCCTTGGCCAGTGAGCATGGTTCTTGGAGGAATTTTTCTGGGGAAATTTTTACACCTTGATTGTGATGCTACTGAGGCAAAGGAGAAGCTCCGAATGTTTTTTGAGGAAGCAGAGGACATACTGTTTGCAAGCCCTTTTCCTCAGTCACTTCTCAAGAGAGTAAGTGACACAGGGTATGTTCACCTCAGGGGCTAGAGGATGTCCACACTGGCAGGGTCTTCCCAAGAGCCCTGTAGTGTGGGAAATGCCCAGCATTGGGAAGATCAGAGTTGCATCCCCCTACTCCCAGTTTGCATGTGGCTTGTTTTCCTGGAATCTGGTGGTCTCATGCTCCTTTGCCTGAACTGTAGGAGGTCCAGACTGGGCTGATTGTTGTTCTAGGCAATGCTATATGAGACTCCTGTTGAATAGTATAGGACTGGAGACCTGACGGGTGTCCTGGCATGTACAGGTGCAAACACAGAGGTTGGCCCTGTGTCACTGTGTGGCTTCTCCATTCCCTCCCCAGTATGAGTCAAAGTACTTAGCAGTTGTCATTCTGACCAGGAAACATGTAAGTCACCTGGGTTTCCCCTGGTTTCTGGTGCGGCTGGTGCTGGTTCCAGTTATCTATTGCTACAAAAGGTCATTCAAATAACAAACCACCCTGCACTAAACGCTAAAGCAACCAGTTTGCTATTGCTCCTACATCAAGTGTGAAGACTTCGAATAGCACCCACCGTGCCAGTTATTGTAGGCACCCTCATAGCACCATGGCAGCACCTGGACTAAACTAAGCCCTGCAGATGGATGTTTTCCGTACCTGTGTGGGGCCAGTCACCCTTAGAGAGATGTTCCCTTTGTGAAGCATCTTCAGTCCTTTAGCAGACCTTTGAACCTCCTCTTATCCCTGTCATCTCAAGAATTATTTCCTGGCCTAAGCTGCCACTAGTGTTTAGATGGCAGAAGGAGTGCGTGCATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGGCTCCTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCGAGTGCGTGCATTTCAAACCAGGTTGGAGGTTAGAGTTGTGAGGTTGGGCTGACATGGAGGGTGACAGACAGACACTGGCATTTCCAAGGACAGAGAGTAGTACAGCAGGAATGCAGAACAGTCTCAACAGTAGGGACAGGCACTGGCAGCCATCAGGTGAGGGAGTGTTAGCCTGTTAACGGTTCTCTATAGGCTCTGCCCAACAGTCACCTAGCAACAGCCAGGTAGGCCTGACTTGCTATAAAAAGGACTGTTAGCCTCTCTTCTCTCACTCTGACCCCTTTCTCCTTTTCTCCCTACCTCCTTCCACCCTCCCCTCCACCTGTTCCCAGCTGGCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCTTCTCTGCCTATACTCCCTTTTCAACCCCCTTTCCCATTCCCCCAAATAAACTTCATCCTATACTAGAGCAGTCCCATGGCTGATACCTCAGAGGGAGGGACGCCTCAACATGGGCCTACTGAGGCACCCTCTCCAGCCAGCACCATGTGGCACTTTACAAAGCATCAGAGTGTACCTGTGCAGGGTGCTGTGTGGAGAGCTGTGTGGATTGAGGATGAGCCAAAGGTTATAGGATAAAGTTTGTGGGTGACCAACAGGATGCGTGGACCGTGATACCAGGGAGACTACGAGTGAAGCAGGTGTGATCAACTTCTAGGTTTCTTTGTTCTTGCTTGGTGGCTTTGTCACAGAGATGAAGAGTTTGAATAATCTTCCCCTCATGTGACCCTGTTAACTAAGTCTGGGAAAAGGGCTGAAACCATGACCCAACTCTCCAGGGGAAGGAGAGCACTTCAGAGCACCTCTCTTGGCTCCCACTTACCCAACCGAGTCTTGCCCGAGCCACCTCTCCTGTGACTAGTTTCATCCGTGCTCTCATTCAGCTGCAGCTATCTGACCACAGTAGGGCAGGATGCATTTGTTAAACAGAGGCATATGAACTCTGTCTCTAGTGGTTCCTGCTCTGGGTTCTCCTACTAATGGAGAGGACCAGCTCCTGCTGGTGGTGAGGAGAACACTGCCTCACAGTGTAGAAACTCAGCCTCCTGGCCACTAGTGTTCAGGAAGGAAATCAGGGTTTGCCCTCCAGGGCTAGATTGTTGACTTGCTCAGACAGGTCTGACTGCATTCCCACAGGGAGAGGGCTGGCATTAGCTTTCAAGAGACTGAAGGGGCATCTCCTGACCTCACTGATTTGCATCATGAATACAGGGTGGCTGGGTTTCTATAGGTCTGGTTAGAGGCTTAGATAACCAATTTGGGGGTAGCCCAGGGATTATCTGGGATATTGGCCTTCCACCATGTCTGCAAGGCTGATGAAACACTGCCAGCCTGCTTCCCTGGGAGAACTCTTGGAAAGAGGACCCGGTTGCTTGGCCTTTGGTCAGCGAGGCTGCTTGGCCCATGGGTACTTCTAGACCTACATGAAATCCTGTGCTGGGGACAGGAAGGAGCCTATGTCATCAGCTGTCATAGGCTTATGACACCCTTCCCCTTACAG
Seq C2 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCAACAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTATCACTGGCTGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622:ENSRNOT00000010169:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(24.8=82.5)
A:
NA
C2:
PF0033924=Arrestin_N=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]