HsaINT0027533 @ hg19
Intron Retention
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:1485]
Coordinates
chr1:223842032-223853436:-
Coord C1 exon
chr1:223853112-223853436
Coord A exon
chr1:223842102-223853111
Coord C2 exon
chr1:223842032-223842101
Length
11010 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
TTGTTCCAAATTACTTTCAGGAG
3' ss Score
7.65
Exon sequences
Seq C1 exon
GTGCCTTATAGCTCCCCTCCCAGTGGAGCAGGTGTCTGAGAGTACAGTGCAGCCCTGCCCTTCTGTCCACCCTACAGAGCCCACGGCCATGGCAGCCCAGGCAGCTGGTGTATCTAGGCAGCGGGCAGCCACTCAAGGTCTTGGCTCCAACCAAAACGCTTTGAAGTACTTGGGCCAGGATTTCAAGACCCTGAGGCAACAGTGCTTGGACTCAGGGGTCCTATTTAAGGACCCTGAGTTCCCAGCATGTCCATCAGCTTTGGGCTACAAGGATCTTGGACCAGGCTCTCCGCAAACTCAAGGCATCATCTGGAAGCGGCCCACG
Seq A exon
GTAAGGAAGCGGGCTTGCTGTTGAGTGACATACAAGGTGGAGGGGCCTTACATCTGATCAGGAGGAACTGAGGGAGAAGTTGAGGCTGTGGACCCTAAGTGTCTGGATCTCATATTTCAGATCCCTCCACCACCACCTTTTTTAATTTTATTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCTACCTCCTGGGTTTGAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCATGTCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCAACCTCAGGTGATCCATCTGCCTCAGCCTTCCAAAGTGCTGGGATAGCAGGCATGAGCCACTGCATCTGGCCCCCCCATCACCTTTTGAACTCTTATTTTTTTTGAGGCAGAGTCTCACTCTGTCACCCAGACTGGAGTGCAGTGGTGCGATCACAGTGCACTGCAACCTCAACCTTCCTGGGCTCAGGTGATTTTCCTACCTTAACCTCCCAAGTAGCTGGGATTATAGGCACGTGCCACCACACCCAGCTAATGTTTACATATTTTTGTAGAGACAGGGTTGTGCTGTGTTGCCCAGGGTGGTCTTGGACTCCTGGGCTTAAGCCATCTGCCCACCTCAGCCTCCCAAAGTGTTAGGATTACAGATGTGAGCCACTACACCCAGCCTGAACTCTTGTTCAGAGATGGTGAGGTATAGAGAGAAGAGCATGGATGAGCTTTGGAACTAGGTAAGATAGATTTGAATCCTAGCTCTGCCTGTGTTGTTTTGGGCCGGTAAACTCTGTGAACCTTAGTTTTCTCATCTGTAAAATGGCATTTACTGGCACCTTATTTTTCAGGGTTGGTATGAGAATTAGAGATAAATCTCAGAGCATAGTGCCCAGAACATAATAGATGCAGAATACGTAGTTGTTATTACTGCATATGGTCCCTGGGCCAGTGCACAATGGAACAACTCAGTGCTGGATGCAATCAGCTGGCAGGTAAATTGTGACAACATCATTGCTGAAAGGTGCACGGTTGCGCAAGGTCATGAATTGACATTATTCCATCAGGGCTGGTGAGTGGAGAGGTGGGAGCTGGGGCTCTGTGGATGCAGACGGAAGGCAGAGGCTCCTGGATGCGGTTACTGATACTACCCAAAGCTCAAGGGCAAGGGATGGAGAACAGTCCTCCCAAAACCTAGACCCATGACCTATCACTATGTGACCCTTGTCAAGTGATTCCTCAGGGATGAGAACCTCTCCCATACAGAGTGGTTGTGAGAATTGAGCTCATCCATACAAAGTGCTCTGTTCAACAGAGCTCATAACAACGTCTCAGGAGAGGGGCTATGAAATGACCTGGGCACCTTTTGTCTTCTAAACCATGATAGGGAAATTAAGTCAGGGTTCCTATTTTCTTGGCAGTGGTTGAAACAGGAAGACAAAGGGAGAGTACTTCTTCTAAAATGGTCAAAATCACTATTTAACTCCAGCTAGCTACCTCTACCCTTTTTACTTTGATCCTGCTGATTTTGCCTAACAGTTTTCATCTCTGAGAATAACTCCTTGGCCATGCTGCCCTCCCGCCCACCGTGGTTCATCTTCCCATTCCCCTCTGAAACCTATAGGGTTACCCTGGTATGTTGATAAAATCCAGATTGGGAGTAATGGTTTTTATTCTAATTTCAAGACAGCCACATTTCATTTCAACAGACAGTTTTTTTGAGCTTCCATTTTGTGCCAGGCATGGGCTCTGCACTGATTGGAAAGGTGGTCAGGGAGAAGCTGAGGAAGGAGCTGTGGTCTCAGCTCTGATGGAAAGTGTGGGGAGACACAGGTGTGAATAAAGGACAGATGCCCAAGGCAGAATGAAGTAAGAACTCTACAGAGGCATAAATGATGGGCCATGGGAACCTGGGTTGTCACAACTGGGTGGTGAAAAGCCTTAGGGAGGGGTACCATTGCAGATCCCAAGGGTCTTGGGGGAGAGGAAGGAGGGGGAGAAAATTTTCCTTTAGAGACCAAAGTCAGGTATCAGTTAACCTTTGCTTAGTTTTTCTCCTTTCTTTGAAATCCTTAGAGACTTTACCTCCTTAACCACATAGCCTGTTCTTCCCCAAACTATGTCTTCACCTGTCCTCGTGGTCTGTGGAAATGCGGTAATTGTAGACTGGATGTGCTGATTTGTGGCTGTCAAAGGAGGAAGTAAAATTCAGAGCATGAGGCAGTAGAACCTGAGTAATGCGGAAGGTGCAATTGAAGGACTCCTATTTGGAGTTTTCAAGTGCGTGTTGAGTAAATAAATGCGTGTCAAAATTTAACCTCTCCTTCCCTAATCATCAGTGAAAAATTATCACACAGCTGCTTTTGGGCAGGCTCATGCTCACATACCACAAGGGTACATTAGAGAAGGCAGACTTATCCTCTAAGATCTTACAGTTATTGAATAGACTCCTGAATCAGTAAAGATTCTGATCCTATCTCTATGAGGAACATGCATTGAATGCTGAGAAAATTAGCCTGATCCTAAATGCTTCATTATTATTTTTTCCTCCCAAGAGGCCTTTCAAGGGTTTGCAAAGAGATCAGGGTATCCAGAAATGTGGTGCATTGTAAGTTCATTTGTTGCATTTACTCATTTATTTTTAAATTGTGGTATGATACACATAACATAAAATTTGCCATCTTAACCCCTTCTAAATGCACAGTTCAGTGGCATTAAGTACATTCCCATTGCTATGCAACCATCACCACCCTCCATCACCAGAATTGTTTTTATCTTGCAAAACAGAAACTAAATACACATTTAAAAACTCCCCATTCATTCTTCCCCGAATTTCGTTTCCTTTCTTTTCTTTTTTCTTTTTCTTTCTTTCTTTTTTTTTGTTTGAGATAGAGTCTTTCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCCCTGCAACCTCTGCCTCCCCAGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCAAGCCTGGCTAATTTTTTGTACTTTTAGTAGAGATCGGGTGTTGCCATGTTGGCCAGGATGGTCTGGAACTCCTGACCTCAAGTGATTCAATCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCCTTCTCCCCAGTTTCTGACAACTGTTCTCCTTTCTGTCTCTTTGAATTTGATTATGTTGGGTACCTCATATAAGTGGAATTATACAGTATTTGTCCTTTTGTGACTGGCATAACTCACTTAGCATAATATCCTCAAGATTCATCCATGTTGTGGCATATGTCAAAATTTCCTTCCTTTCAAAGGTTGAATAGTATTCTGTGGTGTCTATAGACCACATTTTGTTTATTCATTTGTCCATTGTTGGTCTTGGGTTGCTTCCACTTTTGGTTATTGTGAATCATGCTGCTACAAACATGGGCATACAAACTTCTCTTTGAGACCCTGCTTCCAGTTCTTTTTGTTATATACCCAAAAGATATGACCCATGGCTGGATCATATGGCAGTTCTACGTTCAAGTTTTTGAGGAACCACAGTGCTGTTTTATATAGTGGTTGCACCATTTTGCATTCCCACCAGCAGTGCACAGGGTTCCTATTTCTCCACATCCTTGCCAATGTTTGTTATTTTCTTTCATTTTTTTTCTTTTTTGAGATGGAGTTTCACTCTTGTCTTGTCACCCAGGCCGGAGTACAATGGTGCGAATTCGGCTCACTGTAACCTCTGCCCCTCGGGTTCAAGTGATTCTCCTGCTTCAGACTCCCGAGTAGCTGGGATTACAGGCACTCGTAACAATGCCCAACAAATTTTTATATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGTTGATCTGCCCACCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCACTCAGCCATTTTCTGTTTTTTGATAGTAGCCATTCTAATGGGTGTGAGGTGACATTTCATTGTGGTTTTGATTTGCATTTCCCCAAAGATCAGTGATGGTGAGCATCTTTTCATGTGCTTATTGACCATTTGTAGATCATCTTTGGAGAAACATATATCCAAGTTCTTTGCCTTTTTTTTTTTTTTTTTAAGACAGGGTCTCACTCTGTTGCCTAGGCTGGACTGCAGTGGTTCAATCTTGGCTCACTGCAACCTCTGCCTCCTAGAATCAAGTGATTCTCGTGTCCCAGCCTCCCAAGTAACTGTGACCACAGGCTCCTGCCACCAATTGGCTAATTTTTTGTGTTTTTAGTACAGATTGGGTTTTGCCATGTTGGCGAGGCTGGTCTCAAACTCCTGGTCTCAAGTGACCCACCTGCCTCGGCCTCCCAAAATGTTGGGATTACAGGTGTGAGCTATTGTGCCCAGCCCCTTTGCCCATTTTTAATTGTGTCGTTTGCTTTTTTATTTCACTGCTGCTTTTGAGGGTGATTTTGTACTTCTTCAGTGTTGGGGGCTTTAAGTCCACTGCCTAAATGTGACTCATATGATCCTGGTTCCCACACAGACGTTAATTTCTACCGCCCTTTGGGGGAAAGCAGATGAGATGGGTTGAACATGTATGTACACATGTTTTTGTCCTCTCAATAATAAAATAAAGATTGATACTTAGATATTTTCTGAAATCACATCATTTGACATCCTGCCCCTGCTGGGCGTTTCTGCCTATTCATAAGCAATTGAGCAAAGATTTGCTTGAGCTCTTGTCCCAAGGGTTTCAGGACAAGTTTGCCCAGAGGAAGGGCTCAAGGTCAAGCATAGGTTCTCAGGATGAACTTTTGGTTATTCACAATCCTGAGACAATTTAGGGTTGGGCAAGAACAATCCTACCACAAACAGCATGGTTGGCTATGTGAGATCGGGGGTGTTCTTAGCAGGTAGATTTTTGCCTCCTTATTTTCTGGCTTCCCCTCTGTGCTTGGTTAATGCCCAGCCCAGGTCCTGTGGTTTGAGGAATGCCCAGCATGAGCAGGCCCTGGTGCAGTGCAGTCAATGATATTCTTCCCTGAAGTGTCCACTTTTTGGCAATTAAGTGGTTTATTGATCTTAAGGAGAAATACAGCAAGACAGCAATGAAGTGATGTCAGCTGCATAATAAGGACCTAGTTTAAGAGAAATGTCAAGGGGATGAATTGTTGGGAGGTTAGGATAAGGATGAGGGTGACAGGCCTCAGCTTGGAGCTTCCACTCTTTCTTCAGCTGCTACATCTGGAGTGAATCTGGAGTTTTCAGTTTAGCCATGATTTATTGCGTGCTGGTTGTGTTCAGGTGCTGGAGAGGAGTCTTTGTGGAGCTTTGGCTCATCAGGGAGAGACATACGGACAAGTGGACAGCTGGCAGGCCACAGAGTGGTTAAGAGCATGAGCTCGTGCGTCAGGTAGATCAGGTTTCTGGTCCCCTCTGGCCATTTGCTAGCTGAGGAACCATGACTAATGACCCCAAGACTCAGTTTCCTCTTCCATAAAATGGAGATAACAATATTACCCACTTCACTGTTTTTTGGAGGCTTTGGTTATTGGGATGCTTGAATAAGGAAATCTAGCTGTTATTACAAGACAGAATATCCAGAGAGTGAAATAAATAGAAATATGAACACAATGTATGGGAGTTCAGGGGAAGAAGCAGTTAAATTTGACAGTGACATTGGGGCAGGTTAATTACCGGAGACGTTTGAGTTGGGATTGTTGGTGGAAGAGAATCGGGATAGAGACTGAAGAGAAGGCGCAGGTGTGGGCAGAGGTACTGGGTTGTGGCAGTGCATCGGGAGCAAGTGTATTCAGAGGAAGGTGGGAGTCCACTGTGATGGGAAGAGAGTGATAATCACTCACTGTGGGAAACTGACAGACAAAGCTGGAAACATCCAGTGGGGCCAGATCACAGAGGGATGGAGGTGCTGGGTCAAGCAATGTGGCTATACTTGAAGATGATGATGGTGAAGATGGCAGCATCTCTGGGGGTTCTAAAAACCAGAGCTCCTAAAGTGCAAACCAAAGCTATCAGACATGGTTAACGCTCTAGGAGAGCAGTGTGGCCAAACAGCCATCATCACTGAGACAGTGTGGGTTTCAGTCACTTTCTGCCTTGGATTCTTGACTGATACCTGTATTTCCTTAGGCCTGGTCATCAGAGGCTGATCCTAGGTTAGAGTAATTTGTATTTATGGAGTGTTTTGAGATCCTCGCTTGAGTAATAGAAAACAGTGTTACTAAAAAGACATGATTGTTATTAGGAAAGATAAAAAAGGGTTCTAAGTGTGGGTAGGTGGCAGGCTGCCTCTTCACAGAATCCTGCCTCTTTAAAACCTCTCTGACTCCCAATTACTTTGTATCTCTGATCTGTGCTTCAACAGGAACTTAGTAATGGAGAGATTTGGGGTAAGTTCTTTGGGCATCGTAGTGAGATGGAATCTCCTTGCAAAGCTGGGGATTTTCTTTTTCTTTTTCTTTTTTGAGACAGAATTTCACTCCATCACCCAGGCTGGAGTGCGGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGTTTCAAACAATTCTTATGCCTCAGCCTCCTGGGTAGCTGGGATTACAGGTGCACACCACCATGCCTGGCTAGTTTTTGCATTTTTATTTGTAGAGATGGGATTTCACCACGTTGGCTGGGCTGGTCTCAAACTCCTGACCTCAAGTGATCAGCCCACCTTGGCTTCCCAAAGTGCTGGGATTACAGACGTAAGCCACCATGCCCAGCCCAAAGCTGGGGACTTTCTGTGGTCCCTGAAAGATTCATGCAACATATCAGTCATGACATTCCTTGGTGTGTGTGTATGTGTTTTTCTGGGGTGGGGGCATTTTTTGAATTATACTGAGTACCACGTAGTAAAATGGACATTCCATCTACCTACAAACCACTTAGCACCATTCTGTATATTTCACTTGTAATTGTCTGTAGCCTTTGCCAATGACTCTGTCTTCCAACCCAAACTCAACATTTTAGCAGAACTTGGGAGGCCTATTAGATATGAATCTAATGAAAAATGAGCAATGTGACACAGGTAATTGAAGATACAGCTCAGGGAGTTATTTTGGAAGCATCAGCATATTCTGCAGTTAATAGTTGAAGCCATGAGGTCGAATGATGTCACTGAGAGAAGAATGCTTAGGGGTGTTACTGCTGTATGAAATGGGATAATCTCAGAGGGTTGAGGACCAAGAGCCAGGGGTTCCTTGATACTTAGGGGTAAGCACAGTAGAAGAATGCATGAAGGAGACTGAGGAGAAATGCTCAGAGAGGCAAGGAGAAAATCAAGCATGAGTAAGGGTATGGAAGTCAATTTCAGAGAGGGAATAGCCAACGGTACCAAATGCAAAGAGAAGTTAGTTATTATTGATGACATGGGTGAGAGGAGTTTTATGAAGCTATGGATGTAGAAGTCAGATTTCAGTAGACCGATGGATGAATGGCGGATGAAGAACAGGAATCTATTCATCTATTTATTTATTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTAAAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCTCCCGGGTTCAAGTGATTCTCTTGCTTCAGCCTCCTGAGTAGCTGGGACTACAGGCACTCACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCCTGTTGGTCAGGTTGGTCTTGAACTCCTGACCTCAAGTGATCCACACACTTTGGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGTCACCATGCCCAGCCAAGAACCTATTTTAAGAGAGTTTTTAAGAAAAGAGATTCTTCCAAACCCCTATTGAGTGTGCTGTCTTTTCTTTCCTCTTGACGACACAACATTTTCCTTCTTTTTTTAAAAACAACATTTAAATTAAAATTTTTTTCTCTTTCTTTTTACTTATTACTCTATCAGATCTCTCTGCCTTTTATTTGCCAAAAAATGACTGCTTGGAGACTGGGAGCTCTTGGGCACCCGGGGTGAACATTTGCAGCTGCACACTTTTAGAACACCCAGATTGGCTGGTGCCACTTTTCTCTTTAAGTTGCCGCCAGAGATTGCAAAAGACTGAAAGCGAATGAATAAACAAAAAACTAAAGGTCCATCACTAGAGAACCTTTATTTACAAATAAATAAATGGCAAGAAAATAAACGAGCTAAATAACTTATGGTACTTTTAATGAAGTTACAAAGCTCTCTATGTCCTAAGACATACGTACAAGACATATGTGATAAAAATGTGTGTATGTGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGTTAACAAGGCGAAACCCCATCTCTACTAAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAGGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCATTCTGGCTTGGGCCAAAGAGCGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAACAAAACAAAAAAACCCAAAACGTGTGTATGTACATAAATATGCTTTCATATCAGAAGACAGCTTCTGGAGGGACACTTAAGAAATGCTACCAGTGCGGACTCTGAGGCGGAAGGGATTTTGTGTTTTACACCATTATTTACTGTTGGGTTTTTTTTCTCATGTTCATGTATTAGTTTTTCAATGAAAAACAGGTAAATAAATTTTTGTTGTTGTTGTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAATGGCGTGATCTTGGCTTACTGCAACCTCCGCCTCCTGGGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACGGGGGCGCACCACCATGCCGGGCTAATTTTTGTATTTTTAGTAGAGAGGGAGTTTCACCATGTTAGCTAGGATGGTTTCAAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCAAAATTTTTTTTAATACTTGGGAAAAAAAAAAAGTCAGCCCAGAGGAGCTGTTTCTGCCATTTCAGCAGGAGCCAGCACCTTATAGAGGCTATGGGGCTGCCACCTGGAAGGTTCCACCTCACACAGCAGAATCCCAGAATCCCCACTGCCAGCTTCATCCAGACCCCATGCATCTGCCCTCAGCCCACCCTCCTGCTTCCTGGTCCTTTCTGATCTGCCCTTTCTTCACCTCTATGAAGTAAGAATGAAATGATTCTCTCTCTCTGTGGCCAGACAGTCTTTGATGTAGTGCAGCCCAGGATGCCACCGATTAAATGTAGGCTGACTTCCGTTTTGTCCCTCGAGGTCCTGCCCTTTTCCCCTAGCAGTTTGCCTGGTGAACAGGTAGACCCATCTCTTCTTTAGGAACCAGTACGTAGACTGCTCCTGCATCCTACCTTTCTAATGGACAGGCATCATCTCCCACCCACTAAGTCTTGCAGCCATCATCCCTGTTGGGCCCTTCTCATTTTTCTCTCTTTGTGTTTTTTCTCCCTTTGTGGATATAGCCTACATTCTATTATTATGCACTAGCCTTTTTTCTCTGACTTTTTTCATAATGTCAATCTTGGTTTGCTATATACAGCAAAAGCACCTTGAGGCCAAGAACTACGTGGTTTATTTCTTTTCTTTCTTCATTTCACCATGTTTCCCTCTTTCCCCTGCCTGCCATGGTTCAAAGGGTACTGGATACAGAACGGGCACTCAAAAAATCCTTGCTGGGTAAACAAAGAAAGCATGACTAAAGCATGTGTCATTGTGCCCCAACAGAGCACCAGGGCCATGAGATTGCTGTAGGCAGATGCCAGTTGAGATAGGTGAGTGGAGGAAGTGCAGGTCAGATATGTGAATGTATCAGAGATGAATTCTCATCTCAGGATACATGGTACTTCTGACACTTCAGTGTGTCCATCAGCACATGGGGTCATTATCATTTAGTCAAGACTTTAACGAGTGCCCACAGGGTGCACAGCATTTTGCTAAATATTCTTCTAATCTCTTTATGTAAATAGGGGTGTTGTCTGAATAGGTGAGATCATTTTTCATCACATATTATCTCAGCCTTTGCCTTTCTCCTACCTCCCTGCTCCTCACCACCTTTCCACACCCACACACCCACACACCCACACCACACATATAGTATTAAAACACTAGTCCTGTCCAGGTGCTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGATGGATCACTTGAGGTCAGTTCAACATCAGCCTGGCCAACATGGTGAAACCCCATCCCTACTAAAAATACAAAAAAAAAAAAAAAAAAAAATTAGCCGGGTGTGGTGGCACGTGCCTGTAATCCCAGCTATGTGGTAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGGCTGGGCAACAAAGCGAGACGCTGTCTCAAAAACTTAAAATAAAATAAAATAAATAAAAAATAAATAAAAAATGAAAACACTAGTCCTGGCAGGGGCTCTGGACTCCAGCTTCTGCTCTGTTCACCCCTGGCTGTGTGACTGTGACCAGGGCTCATCCCCTCTCTGGGCTTCAGAGTCCTCAGCAATAAAACCATGTGATGGGCAGTAGACAATCCTGGGTTTCTTCCAGCTCTGCAACCTGGGACTCTGATGTTCCTTTCCCCAGGCTGCTGCCATCACTGAGCACCTTGTGACTTGTGTTTTGTTCCAAATTACTTTCAG
Seq C2 exon
GAGTTGTGTCCCAGCCCTCAGTTTATCGTTGGTGGAGCCACGCGCACAGACATTTGTCAGGGTGGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-CAPN8:NM_001143962:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=43.0)
A:
NA
C2:
PF0064816=Peptidase_C2=PU(62.2=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)