BtaINT0092728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27738967-27747831:-
Coord C1 exon
chr16:27747572-27747831
Coord A exon
chr16:27739037-27747571
Coord C2 exon
chr16:27738967-27739036
Length
8535 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTGTCCCCGATTGTTTCCAGGAA
3' ss Score
7.61
Exon sequences
Seq C1 exon
TCTACCCCACTGAGCCCTCAGCCATGGCAGCCCTGGCGGCCCGAGTAACCCGGCAGCGTGCAGCCACCGAAGGCCTTGGCTCCAGCCAGAAGGCTGTGAGGTACTTGGGCCAGGACTTCGAGACCTTGAGGCAGCAGTGCTTGGACTCGGGGCTCCTATTTAAGGACCCAGAGTTCCCAGCGTGCCCGTCAGCTTTGGGCTACAAGGATCTCGGACCTTGCTCCCCTCGAACTCAAGGCGTTGTCTGGAAGCGGCCCATG
Seq A exon
GTAAGGAGGTGGGCTTGCTGCTGAGAGTCAGCATTGAGGTCCCTCGCTTCTGGGCAGTAGTTGAGGAAGAAATTATGATTCTTGACCCTGTGTTCCTGGATCCCGTATTTCAGACAACCGCCCCCCTCCGCACCCCCACTTAAAATTTTTTTTTCAGAGACAATAAAGTATAGAGGGAAGAGTATGCATGGGTTTTGGAACCAGACAAGTTAGATTGGAATCCTGGGATCAGAATCATCCCTTACCTCCAGCAATCTCTTCCCTTTCTGTTTTCATCCTATCAGTTTTACAAAACAGTTACCTCTCCTGGAGAAGGAAGTGGCATCCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGGCAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAAAGAGTTGGACATGACTGAGCACCGCCTCTGAGCATAACTCCTTGGCCTAGCCTCCCTCCAGCCCTTCCATGGCCATTTCCCACCCCTCTCTGGAGCCTATCTGGGTACTTTGAGATGTTCGCAAAATCCAGGTTGGGTTTATAGTCTAATGTCAGGAGTTGAAAGCCATGTTTCATTTCAACAGATGGTTTTTGTTTTTTTTTTTTCTTTTTTTAGGCCTGTTTTGGGCCAGGCGTTGGCTCTGCCCTGTTTGGGAAGGTGGTTGGGGAGAAACTGAGGGATCAACTGTGGTCTCAGCTCTGATGGAGGTTGTGGGAAGGCAGACAACTGAATAAAGGACTGACATCCTGGGCAGAATGAAGGAAATGATAACAGAGACATAAACCATGGGTGCGGGACCCTGGGTGTTAAGACTGAATGATGGAAAGGGAAGAGGACGCATTCAAGTGGGATGAAGGGCCCCAGGGAGCCTGGGGCAGGCGAGATGGGTAAGGTGGGAGGGGAGAAAGCTTCATTTGGTGACCAAAGTCAGATATCGTTAGCCTTTGCCTAGTGTTTCTCCTTTGTTTGAAATTCCATATATATATATATATATACTGTGCTTAGTTGCTCATTCGTGTCCTGCTCTTTGTGACCCCATGGACTTTATAGCCTGCCAAGCTCCTCTGTCCCTGGGGATTCTTCAGGCAAGACTAGTGGAGTGGGTTGCCATGCTCTCCTCCAGGGGATCTTCCCAACCCAGGGATTGAACCCAGCTCTCCTGCACTGCAGGTGGATTCTTTACCATCTGAGCCACCAGGGAAGCCTATGTGTACATATATATATATATATTTGTGTGTGTATATATATATATTTCAGAGAAGGTGATGGCACCCCACTCCAGTACTCTTGCCTGGGAAATCCCATGGACGGAGGAGCCTGGTAGGTTGCAGTCCATGGGGTCGCTAAGAGTCGGACACGACTGAGCGATTTCACTTTAACATTTCATTTTCATGCACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAATATATATATTTGTGTGTATATATATGTGTGTGTGTATATATATATTTGTGTATATATATGTGTGTGTGTGTGTATATATATATATGTATATATATATATTTGTGTGTGCCAGATGGAACCTGGGCCCCCTGCTTTGGGAGCACAGAGTCTTGGCCGCTGGACCACCAGGAAAGCCCCTCCTTCCTGTGAAATTCTTAGAGCCCTCACCTCCTCAACCACGTTCTGCCCTAGACTGTGTCTTCACCTGGCCTCACTATCCACATAAATTTGGTAATTTCAGAATGGAGTGCTGATTTGTGCCTGTCAGCAAAATGCTATAAAATCCAGACGATGAGGTAGTAAGTAGAACCTGATTAATGTGAAACCTAAGTACTCCCATTATTGAGAATTTTCAGATGAGTGAATAAAAGCCTGTCAAAATTTACCCTCTCCATTCCCAGTCATCAGTAAGGATTCTCACACGGCTGGTTTTGGCTAGGTTGTGCTCACACATCACTTGGCATGCTACAGGACCCAGCTTTATCCTCTACGATCTTACAGGTTTTTGAATAGGCTCCTGAGTTGGTAATGACCCTGATTCTGTTATTAGAGATGTGCCTCAGGATCTGGGAAAATCAGCCTGTTCCCAAATGCTTCATTTCCTTCTTCCTTGAGGTCTCTCAGGGGCCCGCAAGAAGGTCGGGGTGTCCAAAAATGAGGTGCATCAATGAGTTCATTTGCCTTTTTCCCTCCCTCCCCTCTCTTCTTCCCTTTCCCACTCCCTCTTTCTTCCATCTTTCCTTCCTTCCTTCTTTTCTTTTTCTTGCTGCTGCCGCCACCGCTAAGTCGCATCAGTCGTGTCCGACTCTGTGCGACCCCGTAGACAGCAGCCCACCAGGCTCCGCCGTCCCTGGGATTCTAGAAGCGGCTTCTCATCTCCCAACTTCCCCATGGCCCTGGGTTGATGCCCAGCCCGGCCTCTGTGGTTTGAGGGATGCTCGATGTGTGCAGGCCCCAGTTTGGACCAATCGATGATTTTCTTCTCTGTCCTTTTTTTTTTTTTCCCTTTCTGTAATTAAGAAGTTTATTGATTCTAAGGAGAAATACAGAGAGAGAGAGAAGTGAGACAGTGTCAGCTGCATGGTACGGACTCATGGAACAGCCAACTCCAGTTAAGAGAAACCTGCTGGGTTGACCTTTGGGAGGTTTGGATAAGGATGAGGGGGCGAGGCCTCAGTGTGGGGCTTCCACTCTGCCTGCCGCTTAGGTGAATGAATTTGGGAATTTTCAGCTCAGCCTTGATTTATTGAGTGCTGGTCACGTACAGATGCTAGCATGGAGCCTTTGTGAAGTTTGGCTAGCCGGGGAGACAGTCAAATAGTGGACCAGTAGCAGAATGGCCAAAAGCTTGGGTTTGGGCAACAGGTGGGTCAGGATTCTGGTTCCCTCTCTGCCATTTATTAGCTGTGTGGCTAAGTTACTGACCTCCCAGGACTCAGTTTCCTTGTCTATAAAATGGGAATAACATGGGACTTCTCTGGCAGTCCAGTGGTTAAGACTCTGTGCTTCCACTGCAAGGGATGTGGGTTCAATCCTTAGTCAGGGAGCTAAGATTCCACATCCCACATGCCATGCAATTTGGCCAAAAAAAAAAAAGAAGAAGAAGAAGAATATGACTTATCTCATTGGGTTATTGGGAAGTTTGAATGAGAGGATGAATTTAGCCCAGTGCCTGGCATGTAATAGATGCTTGATTCTATGAGCTGTCTCTAGCTATTACCGTAAGACAAAATGTCCAAAGAGTGAAATATGAATATGGACACAGTGTACAGGAGTTCAGGGCAGAAACAGTGAAAGTGACTGTGGGATTGGGGCAGGTTAATTACTGCAGACATCTGAAGGTGGGAGGGCATGTTGGTGAAAGAAGAGGGTCATGATCAAGACCGAGAAGGCACGGTGTGGGCAGAGGCACAGGGCCGTGGATGTGCATTCAGAGCTCGTTCAGAGGACGACAGTGGCCTGTAGTCAGAGGAGAGAGAGCACCGTGGGAAGCAGACAGCAAGCCTGGAAACGTCAAATGGGGCCAGACCCTAGAGGGACAGGAGTGCTGGGCTGAGTCCCATGGGCATAATCAATGCTGCTGCTGATGAATGTCACAGCATCATTGGGTTTCCCGGAAGCGCACAGCCAGGGCTCCTGAATTGCCAAACATAGATTATCAGACATGGACTAATATCCTGGGGAGCAGCATTTCCAAGTCATCAAATCACTGAGAGTGTGATTTAAATCACTTCCTACCTTGAATTTATTACTAATACCGGTGGTTCTCTTGTGACTGTTCATCAGAGGCTGATAGGATGCTTGAGTAATTGAGTTTTTGGTGTGTTTTGATTATCAGAGAAATTGTAAACATTATTGCTAAAAAGACATGTTTGTTCTTAAAGAAGAAAATATAGTGTCCCAAGTGTAGGGAGTTGGGAGCCTGCCTCTTTGCAGGGGCTTGCCTCTTTTAAACATCTTTGACTGCCAAGTTACTTTGTATCTCTGATCTGATCTGAGTTCTGATAGAAAGTTAGTAATGGAGAGAAGACTTTGGGAATATTCTTCAGGCATAATGCTGAGATGTGATCTCCTTGCAAGGCTAAGGACATTCTGTGGCCCCTGAGAGATTCATACAACATATAAGTCAGGGAATTTCCTGGTAGTTTTCTCTTGGGGGGTGGTGGTGTATATTTTGAGTTATGCTAGTGAATAACATGTAATCAAATGAGCAGTCCATCACCTCGGAACCCTCTTGGGCTTCCCAGCTGGCTCTAGTGGTAAAGAACCCACCTGCCAATGCAGGAACCATAAGAAAACGTGTATTTGATCCCTGGGTTGGGAAAATTCCCTGCAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGTCAGAGGAACCTGGCAGGCTATGATCCATAGAGGTGCAAAGAGTTAGACACGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAACTGAAAGTGACTTAGCGGGCACACACAGGAACCCCTTAGCACCACTCTGGTTATAACGCTTTCTGTTGTCTCTAGCCTTTGCAAACCACTCTGTTTTCCAAGCCAAACTTACATTTTAGCTGAGCTTGGTAGACCTATTAGGTATGAGTCTAGTGCGCTTCTACCATATAGACAGTGTGACATGGGTAATTGAACGTACAGCTCGGGGGAGTGCTTTGGGAGCATCAGCATATTCTATAGTTAGTAACTGAAGCCACAGGTCTGGATGGCATCACCCAGGGAGAAGGTTTCAGGCATGTTATTGCTCTATGAGACGGGGTCATGCCCAGGACTGAGGACCCAGCTCAGGGGCTCCCTGGTCCTGAGGATGAACAGAGCAGAGGAACTCTTGAAGGAGACTTGACAAGGAGTAGAGAGGTGAGAAAGTCAAGACCGAGTGAGGATACAGACGCCAAGAGAGGAGGGTTTCAGAAGGTGGGAACAGGCAAGAGTATCAAGTGTAAAGAGCAGTGAGACGGAGGAGAGCGAAGCTCAACCTGTGAGTGCTGGTGACTCAGGTGAGAGGAGTTTCATGGAGCCCTGGGAGACTGGAGCCCGGCTTCAGGAGACTGACGGATGGACGGGAGATGAGGCGCTGGAGATTCTTTAAAGAAGGTTTTTAAGCAGAGATTCTGCCCAACCTCTGTTCAGCGTGCTCTCAGCCCTCCCCCCCTTTTTTTTTTTAAACAAACAGATTACATTCAACATTTCTTTTTGTCTCTCCATTTCTATTAATTAAAATTTCAAATCTCTCTACCTTCTGCCCACAAAGAGAGGATGTCTGGACTCTGGGATATTCTTGATCACTTGGGATTAGAATTTGCTGCTGCCCACTTTTAGAACCCCTAGTTTGGCTCATGCCACTTCTGTCTGTAAATTGCTGCTAGAGGGACAGTTGGTGATCCAGTGATTAAGACTCCGTGCTCCCAATGCACTGGCCCCAGGTTTAACCCCTGGTCAGGGAACTAGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGTGAAGAGTCGGACATGACTGAGCGACTTGACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCCACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCTGCAGCAGGGAACTAGATCCTACATGCTGCAACTAAGACCTGGTGCAGACAAATTAAAAAAACAAAAAGTTGCCACTAGAGGATGAAACAAACAAGCAGAACTATGCTCCATCTTTGGAAGGCTGGCTAAATAACTCACGGTACTTACAATGAAATGATAAAGGTCTATATGTGCTGAGCAAAGACATACAAGATAGAAAATGTACATGTATAAAGTGTTAGTCACTCAGTCGTGTCCAACTCTTTGTGATGCCATGGACTGTAGCCCACCAGGCTGCCCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCTCTTCTCCAGAGGATCTTCCCAATCCAGGGATTGAATCTGGGTCTCCTGCATTGCAGGTAGAGTCTTTACCATCTGAGCCACCAGGGAAGCCATATATATGTAAATATGCTTTTACATCAAAAGAGTTACTGGAAGGGTATACAAGAAATGTTAACAGCAAGGAATCTAAAGTGAAAGGAGTTTTTTTGTTTTTATAGCATTATTTGCTGTTACATTTTTTTTTTTACCCATGGGCATACACTTCTTAAATAAAAAACAAGTTAATGATTTTTTTTTTTTTTAATATTTGGAAGAAAAAAAAAGTCAGCCCAAAGGCTCTATCTCTGCCCATTTAGGCAGGAGCTTTAATCAAGGGTGTTAGGGCTGCCACTCGGAAGCCTCCGCCCCTCGTGGTCCCAGAACCCCAGAATCCCAGCTCATGGCTGCACACCCACTCTCTCTGTCTGCCTTCAACCCATCATTCTCTTGCTTCTCCTTTCCTTTTCGATCCACCATTTCTTTATCTCTATGGAGTAAGATGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAACCTGCTTGCCAATGCAGGAGACATAAGAGACTCGGGTTCAATCCCTGGGTTGGAAGATCCCCTGGAGGAGGGTATGGCAACCCATTCCAGTATGCTTGCCTGGAGAATCCCATGGACAGAGGAGGCTGGCAGGCTACAGTCCGTGGGGTCACAAATAGTCGGACATGACTGAAGTGACTTAGCACACAGTCACTCATGGAGTAAGATGGAAATATTTCCCATTCTTTGTGGTCAGACAGTCCCTGATGTAGCAAAACCAGGCTGGCTTCCTTTTTGTCCCTTGGGCTTCCACCCTTTCCCCCTAAGAGTGCTCCTGGTGGTGAGGCAGACCCACCTCTCCTTTGGGAACCAGTCTTCACATCTGCTAAGTCATTTCAGTCATGTCCAACTCTTTGCAACACGATGGACTGTAGCCTGCTTGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAAAACTGCAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCCCCCAGGGATCAAACCTTTGTCTCTTATGTCTCCTGCACTGCAGGCAGATTCTTACCACTAGCGCCACCCGGGACTAGTACCACTAGCTTGTCCTAGATTCTGCTTTTCTCACGCACAGGCATCATCTCCCATCTAATAAGTCTTTCAGGCATAATCCCTCATGGGCATTTCTCCCTTTTCTCCTTTTGTTTTCTGTGGTCTACACGGCAGTATTAGGCACTAGGCTTTTCCTCTGATTTTTTTAAAGAAAATTTTTATTTATTATTTTTATTTTTTGGCCATGTTGCATGGCTTGCAGGATCTTAGTTCCCCAACCAGGGATCCAACCCAAGCCCCCTACAGTGGAAGCACAGTCTTAACCACTGGCCTGCCAGGGAAGTCCCTTTCCTCTGATTTTTACCATGGATGTCTATCTTGGTTTCCCACGTAGGCTGAAAGCACTCTGAGGCCAAGAACCACGTGTGTTCTTTCCCTCTGTGTCACCATGCTCCCATCTTTCCCCTGCCCGATATGGAGCAACTAGTACCATGTATCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGTACCATGTATAGAACAGGCATTGAGTACATCCTTGCTGGGTAAACCAGAAAGAAAGAAGGCCTACAGGATGCCTTCTTGTGCCCTAATAGAGCTCTAGGGCTATGAGCTTGCCTGTGACAAGTGCCACTCTGAGATAGATGAGCAGGGAGGTGGCAGGTGTGGGAATGAGGTTGAGTTCTCTTCTCTGGACAGACACTTCCTGAAGCCCCAGTGTTTCCATCAGCACACAGGGTCCTCATTACTGAGTCAATGAGTGTCCGCAGGGCACAGAGCATTTTCTTAGAGTGTAAACATTAGCCTCATCCTCTCCCTAAAAGTAGGGGTGTTGTCTGAACGGTGAGATCATATTTTATCCCGTCATTATCTCAGCCTTTGCCTTTCTCCTGCCTCCCCCGCCTTCACACCCACACACCCACACCCACACTGTATGTATAGTGATAAAAAGCCTGCTCACGAGGGGACCTGTGGGCTCCAGCTCCTGCTTTGCCACCCCTGGCTGTGTGACTGTGGGCAGCTCTCCTGCCTTCTCTGGGCTTCAGAATCCTCAGTGATAAAATGCGGTACATGCAATAGATGATCCCTTGGGTTTCTTCCATGAATTTTGTGACGATCAAGCCCCTTCACCCTTGGTGCCACCATCACTGGGCATCTTTGTGACTTGTGTTTTGTCCCCGATTGTTTCCAG
Seq C2 exon
GAATTGTGCCCCAGCCCTCAGTTTATCGTTGGTGGAGCCACGCGCACAGACATCTGTCAGGGTGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600:ENSBTAT00000011676:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=39.1)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development