HsaINT0036904 @ hg19
Intron Retention
Gene
ENSG00000162368 | CMPK1
Description
cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:18170]
Coordinates
chr1:47834141-47838779:+
Coord C1 exon
chr1:47834141-47834287
Coord A exon
chr1:47834288-47838626
Coord C2 exon
chr1:47838627-47838779
Length
4339 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
AAATCTTCTTTTTCCTTTAGGAA
3' ss Score
10.41
Exon sequences
Seq C1 exon
AAATATGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTGATGAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
Seq A exon
GTAAGGAGTGTGAATGCCAACCAGTTCAAACCAGCGAGGAAAGAAGAAATTAAATTCACCTTTTGGCCAGGCAGTTGCTCATGCTTGTGATCCCAGCATTTTGGGAAGCCAAAGCAAGAGGATCACTTGAGGCCAGGAATTCAAGACCAGCCTGGACAACCTAGTGAAACCCCATCTCTACAAAAAAATTTTTTAAAAAGCCATGCGTGGTGGCATATGCCTGTAGTCCCAGCTGCTTGTGAGACAGAGGCAGAAGGATTGCTTGACCCCAGAAGTTCAAGTCCAGCCTGGGAAACATAGTGAGACCTCCTCTCAAAAATAAATAAATAAACAACAATAATAATAAAAATAAATCCACCTTTCATATGTGTAATGAAAAATATCAAAGATTTTTTGTTTTGTTTTGTTTTGAGACAGTGTCTTTGTCACCCACGCTGGTGTGCAGTGTCCTGATCACAGCTTGCTGCAGCCTCAACCTTCCAGGCTTAAGCCATCTTCCCACCTCAGCCTCCTGAATAGCTGGGACTACAGGTGCATGCCACCACACCTAGCTAATTTTTTTCTATTTTTTGTGGAGACAGGGTCTCACTATGTTGTGTAGGCTAGGCTGGAACTCCTGGGCTCAAGTGATCCTCTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGAGAGCCACCACACCTAGCTCAGAGTATTGAATTTCTTGCTTGTGGAAGGTGGTTATGCTTGAGAATGGCAGAACTGGAAACTTTGCTTTCACCTGGGAAGAAAGCGGACAGTGGCAAGGATTCTCTGCTTTGATTTAGGATCACCTATAGCTCAACTTAACATCCATTTATGTGCACTTGGTCCTTTCTTCCCAACATTCAGACAGTTATTCTCTTCCATTTCTGTTTCATCTTTTTTCCTCCCTCTCCTGCTCCCTTTCCTTTTTTCTTTTTTGCTTGCTTTCTTTTTTTTTTGAGATAGAGTCTCGCTCTGTCGCCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGAGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAGATAGGGTTTCACCATGTTGGCCATGATGGTCTCGATCTCTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTAGAGGTGTGAGCCACCGTGCCCGGCCCCCAATTTTTTTTTTTTTAAATAAACCTCTTTCTTTCTTCTTTCTCTCTCTTTTTTTTTTTTTTTTTGGCGGGGAGACGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGAACTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGAGTACAGGCGCCCGCCATCAAGCCTGGATAATTTTTTGTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCCATCTCCTGACCTCACGATCCACCCGCTTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCATGCCCAGCCCTTTCTCTGTTTTTTAACCCACGTCCCTCTCATCATTGATGTTCGCTCAGCCATGGTGTCTACTTTTCTGGTGTATCACCATCTTCAATGTGAAATGCTAAGACTTAAGAACTTTTAAAACTAAAATATGTCACATCTGAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGGGGATCACTTGAGGTCAGGAGTTCGAGACCAGTCTGGCCAACATGGTGAAACCCCGTCTCTACCAAAAAATATAAAAAATTAGCCAAGTGTGGTGGCACACACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGAAGAATCGCATGAACCTGGGAGGCAGAGGTTTTGGTGAGCCAAGATCATGCTACTGCACTCCAGGTTGGGTGACAGAGTGAAACTCTGTTTCTTAAAAAAAAAAAAATGTCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGAACTTTAAGAGGCCAAGGTGGGTGAATTACGAGGTCAGGAGTTCAAGACCAACATGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAATTAGTCGGCCGTGGTGGCAGGCACCTGTAATCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCAAGGAGGCAGAGGCGGAGGTTGCAGTGAGCCAGGATCGCACCATTGTACTCCAGCCTGGGCAACAGGGTGAGATTCCGCCTCAAAAAATAAATAAATAAATAAATAAATGTCACATCTGAAAAACAGACACCCTGTATTTACTAGGTAACTCTTCATTCTAGATTCCTAGAACTATAATCATTAACAGGTATTTTCACATAGAAGAACAGTGAGGGAGAAAAAGAAATGCAATATTGGGAACAACAAGAAATGGCTGAAGCCTGATGGAAAAGAGCTATGTAAGCATCTGGTTGGAACTAAAGACATTGGGGATGAAAAGTGGCTTGTACACACATTCTTACCTCTTGTCTCAGAGGTTGGAGTAACCTGCTTCCATTCCAAAATAAACAAATCTCTCTCCCTATTCACTCTTTCTAATGTCCTTTCTCTGCTCTATAAAGCAGAGAAAGTATTATGAAAGAGCATATGGTTTTTACTTTTTCACTCTCTACTTTTCCACTCTCTACTTTTCAACCCTTTGCAGTCAGATTCTGTTTCCATCTCCATTGCAGCTGCTCTTGCATGTTACCAATGATGATCTCTATCAAATAATACTTTTGTCATTATTTTTCTTGTAGTATTTAACTTTAATCAGTCTGTTTGAAAATCATTCCTCCTTTGTTCTTTATGACAGCGTCTCTTTTTCTTCTCTCCCTACTGAGTGACTGCTATTTCTCTATCCTCTTTAATAGTTATTCTTTTGCAAGTTTCCAAAACCATGATGCTTCTCAGGGTTTTATACTTGGTCTTATTCAGCTCTCATTTCATATGTTTCTTTCTGGATGGTTTTAGCCATACCCAAAGCTTTCACTATGCTCATGCTGCTAAAGTCTATAGCTCTAAAACAAAATGTTTGTTTTGAATTCCAGACATATATTTTTAACTACCTAACTACTAGGCCTTTATTTGAATGTCTCACAAGTGTCTCAAAATCAACATGTCAGAGGCTGAGTGTATTGTCTAAAATGTGATCTTCCTTTACTTCCTGTCTTGGTTAATGGTTCTGCCATCTACCTAGCTACTCAAGGCATAAATCTGGGAATCATCCTATATTCTCCTGCCTCTTCCTCACTTTCCCAAATCCATTCAGTGAGCATATCTTTCCAGTTATTTTTCTTTTAATCCTCTTCTGTTAGTCTCTTCTCTGTCATCACCTTAGTTCACATCCTCTTTTTTCCTATTTTTTTTTTTTTTTGAGACAGAGTCTCTCACTCTGTCCGCCAGGCTGGAGTGCTGTGGCACGATCTCGGCTTACTGAAACCTCCACCTCCTGGGTTCAAGCATTTCTCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGTGCCAGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCGGGCTGGTTCTTTTGTTGCCTTTGTTTTGGGGCAGCCAGTGACATTTGGGTTTAATTAGCTTCCGTTAAAAAGTATTTTATCCTACATTAATAATTAATGCTAATGGTCTTTTATATTTGTCCAAAGCTTTGTGTTGTTGGACTTGAATTATATGAATAGCAGAGTTGAGCACCTGTAGAAGTAATATACTTTCCACTATAGCAAAACGACTTGGGAAGAGCAAAGGGAATAAAGAGAGGGTCTCCAGTTGCTGGAGCAAAGATAATGGTTAATGGTTATTTTCCTCTTATTGCCGCTCTTATTGTTTATTTATAACTTTGTGAATGTGTATGTGAAAGTAACATATACTTAACTGTAGAAAATTTGGAAACCACAGAAAAAAATTGTGTGTATAAAATGAGGTGGTTTTGAGAGGGGCATATACCCATAACCACACCAACTTGAGGCAACCATCTTAATACATTGATAGATTTCCTTCTAGTCTTTTTTCTTTCTTTCTTTTTTTCTTTTCTTTTTTTTTTTTGCTATGTACCCTCCACCCTTTACTTATGGTTTAAATAATAATAATAAAACACCCATGTATACACTACCATGCTTGAGAAATTTCATTTTGTTAATGTTGTATTGAACCTAAATCTTCTTTTTCCTTTAG
Seq C2 exon
GAAATGGATCAGACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162368-CMPK1:NM_016308:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100),PF134621=Thioredoxin_4=PU(27.0=63.3)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100),PF134621=Thioredoxin_4=FE(43.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)