GgaINT0035247 @ galGal4
Intron Retention
Gene
ENSGALG00000010481 | CMPK1
Description
UMP-CMP kinase [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKE7]
Coordinates
chr8:20846880-20847780:+
Coord C1 exon
chr8:20846880-20847026
Coord A exon
chr8:20847027-20847627
Coord C2 exon
chr8:20847628-20847780
Length
601 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
GATTTGAATTCTCTTATCAGGCT
3' ss Score
6.59
Exon sequences
Seq C1 exon
AAGTACGGCTACACGCACCTTTCTGCTGGCGACCTCCTTCGAGACGAACGGAAAAGGCCAGGCTCACAATATGGAGAACTCATTGAGAACTACATTAAGGAGGGGGAAATCGTACCAGTTGAAATAACCATCAGCTTGTTGAAGAGG
Seq A exon
GTAAGGAAAGGGCTGTTTCCTTGCTGGTTCACTCTTGCAGACTAAGCGACGAAACAGCGGCAGTATTTTGAAAGAACTGTCCCTATTACCCCTCTGTTTTATCAGGATTAGTCAGGTGAAGGAGAGGAGAAGAGCACCTGCTGATGTTCCTGTGGAAGGAAAAGTTCCAATCTTTATCTTTATTAGATGTCCAGGAAAATAATCAGAATATCTCTTCTGAGATGGAAAAGGCTTCTTTAGCTCATTCAGCTGAACTTCTTTGGAGTCCTTTTCATTGTCATTCACTCTAGACCAGGGACTGTTTGACATCTGGTACTGCAATGTGCTGTTACATAATACTGTAGAGTATAAAGTTTTAAAGTTGGGCTTTAAAAGATGTTAAGCTTAATGAAATAGGATAGTCAGTTTGAAAGGAAGCTCCATTGCCACATCAGTGCAGTAATTAGAACGTGTTGAAGATGAAACAAAAAAATACGTTGTACATCTGCAATAGTTCTATGACAAATGCTTCTTAATTTAATATATGAATACTTCGGAGGTGATTAAGGAATTGATAAATAGTTGCCTGTGCAGGAGGTTTTGATTTGAATTCTCTTATCAG
Seq C2 exon
GCTATGGATCAAACAATGGCTGCAAATTCCCAGAAGAACAAGTTCTTGATTGATGGCTTTCCCAGAAACGAAGATAATCTTCAAGGCTGGAATAAGACTATGGATGGAAAGGCGGATGTTTCTTTTGTTCTCTTTTTTGATTGCGACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010481:ENSGALT00000017068:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGCTACACGCACCTTTC
R:
AGAGAACAAAAGAAACATCCGCCT
Band lengths:
278-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]