GgaINT0035247 @ galGal3
Intron Retention
Gene
ENSGALG00000010481 | KCY_CHICK
Description
NA
Coordinates
chr8:22669115-22670015:+
Coord C1 exon
chr8:22669115-22669261
Coord A exon
chr8:22669262-22669862
Coord C2 exon
chr8:22669863-22670015
Length
601 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
GATTTGAATTCTCTTATCAGGCT
3' ss Score
6.59
Exon sequences
Seq C1 exon
AAGTACGGCTACACGCACCTTTCTGCTGGCGACCTCCTTCGAGACGAACGGAAAAGGCCAGGCTCACAATATGGAGAACTCATTGAGAACTACATTAAGGAGGGGGAAATCGTACCAGTTGAAATAACCATCAGCTTGTTGAAGAGG
Seq A exon
GTAAGGAAAGGGCTGTTTCCTTGCTGGTTCACTCTTGCAGACTAAGCGACGAAACAGCGGCAGTATTTTGAAAGAACTGTCCCTATTACCCCTCTGTTTTATCAGGATTAGTCAGGTGAAGGAGAGGAGAAGAGCACCTGCTGATGTTCCTGTGGAAGGAAAAGTTCCAATCTTTATCTTTATTAGATGTCCAGGAAAATAATCAGAATATCTCTTCTGAGATGGAAAAGGCTTCTTTAGCTCATTCAGCTGAACTTCTTTGGAGTCCTTTTCATTGTCATTCACTCTAGACCAGGGACTGTTTGACATCTGGTACTGCAATGTGCTGTTACATAATACTGTAGAGTATAAAGTTTTAAAGTTGGGCTTTAAAAGATGTTAAGCTTAATGAAATAGGATAGTCAGTTTGAAAGGAAGCTCCATTGCCACATCAGTGCAGTAATTAGAACGTGTTGAAGATGAAACAAAAAAATACGTTGTACATCTGCAATAGTTCTATGACAAATGCTTCTTAATTTAATATATGAATACTTCGGAGGTGATTAAGGAATTGATAAATAGTTGCCTGTGCAGGAGGTTTTGATTTGAATTCTCTTATCAG
Seq C2 exon
GCTATGGATCAAACAATGGCTGCAAATTCCCAGAAGAACAAGTTCTTGATTGATGGCTTTCCCAGAAACGAAGATAATCTTCAAGGCTGGAATAAGACTATGGATGGAAAGGCGGATGTTTCTTTTGTTCTCTTTTTTGATTGCGACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010481:ENSGALT00000017068:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGCTACACGCACCTTTC
R:
AGAGAACAAAAGAAACATCCGCCT
Band lengths:
278-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]