MmuINT0037815 @ mm9
Intron Retention
Gene
ENSMUSG00000028719 | Cmpk1
Description
cytidine monophosphate (UMP-CMP) kinase 1 [Source:MGI Symbol;Acc:MGI:1913838]
Coordinates
chr4:114637488-114641969:-
Coord C1 exon
chr4:114641823-114641969
Coord A exon
chr4:114637641-114641822
Coord C2 exon
chr4:114637488-114637640
Length
4182 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTAAGTCTTTTTGTCTTTAGGAA
3' ss Score
8.56
Exon sequences
Seq C1 exon
AAATACGGCTACACACACCTTTCTGCAGGAGAGCTTCTTCGTGATGAAAGGAAGAATCCAGACTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
Seq A exon
GTAAGAAGCATGAATACCAACCTGCTCAAACTACCAAGGACACAGAAACTAAATTCACCTTCATTTGAATAATGAAAAACTAGACTATTAAATTTCCTGATTATGGAAGGTAGTGTGGTCTTTGAAAATGGCAGTGTTGGAAGCTGCTTTCACTGTGAAGAAATTGACAGTAACCAGGATTCTCTGCCTTGGTCTAAGAACAGCTATAGTCCAGCTTAAGGTACACATGGTTATACTTGCTTTTGCTTTTTTTTTTAAAAAGATTATTTATTTATTATATGTAAGTACACTATAGCTGTTTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGAGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAATGCTCTTAACCGCAGAGCCATCTCTCCAGCGCTTGGTTTTGTTTTTGAAACAGTCTTATGTATCCCAGGCTGACCTGGAAGTTACCTAGTCAGGGATATTCCTGCTTCTGACTGTTAGGATTCCAGGCACTGGACCCATCCCTGCCAGCATGCAGTAGTTCTCTCCTGTTGTGGTTATTCTCCCCTTTCATGCTCTGTCCTCCCTTTTCTTGAATGTCTGTGTTTTCTCCTTCTCTGATTCCCACTCAGTTTTCTCATTGTTGATATTCTGTTTAAAAGTCTCCTTATTTTCCTGATGAATGCATTGCTATTTTCACTGTGAGATTTGAAAAAATATATACCTTGGTAGGCAATGCTTTCCTGCAGGTCCCTAAGACTAGTCAGTAACAGATATTTTGACATAAGAAAATCAGCGAAACAGAATTGCATTGTTGGGAACAGGAAGCAATAAATGGATCTCAGTAGTGAATCTTGGGTGTAACTGGAGACACTTGCAGTGTAGAGTGGCTCTTACACAGTCTGCCTCAGCCTGAACAACCAGCTTCCTTTCCAGAGTAAGTAACTCTCCCGTCCTGTCCTCTGACCCTGATGCCTTTCTCTGCATTATAGGCATGATCATTATGAAAGGGCAGTCGACATCTCCATGGAAACTACTCTTTTTGGTGTGTGGTACTGGGGATGGAATATAGGGGCTTTGAGCATGCCTGGCAAGCACTCTTGTCCCTGAGCTTCATCCTTTTTTTTTAAAAAAAAAAAAAAAATTTCTGTCTTTGAGACAGGCTATTACCAGGTTTCCCAGTTGGCTTTGAACTCACTCTATAGCCCAGGTAGTTCTTGAACTTGGAGTCTTCCAACATCAGCTGTTGTCACAGGCAGAACTCTCACTGCATGTTATCAGTGATTGGCCCTGTATAGCCCAGGGGATACTTTTAGTCTTTAATGTTCCTCCTACATTTAAGTCTTAATAAATGTCTCTTTGAAACAAACTCTACCATTTCTTGTACCACCATTTCTGTTCATTCTCTTCCTACTTAAGGAACTTCCATTTTTCAGTCTCTTGATTTTTTTTTTTTCCTTTGCAAGTTTTCTAAATTACTATGCTTCTAAGAGTTTGGTTCTCTTGAGCTCTCATTGTATATATTCCTTGTTGGGTTGTTTAAACGATGCCCATGTTTTCATTGTGCCAATGCTGCTGAACTCTAGAGTTTTGCACAGACAGACCTTTGTTTAGCTTCCAGACATATGCCTATCAGGATGCTATCTAAATTATCCATAAATGTCTCAGTCATACCAGAAGCTAAATGTGTCACCCAAAGGATGATGTTTATTTCCTGATTTGGCTGTTGGTTGGATTGACTACCCAACTCTTTAGTGAGAGGATCTCTCATTCACTCCTGTTCATTTTCTGTCTATCACTAAAATCACTTGAATCTTTTAATGTTGTTTCTTTTCCATCCTATCTCCCGCCACTCTCGATATATGTCCTAACATTCATTTGTACCAGCTTGCCTCAGATTCACCAAAGCTGCCATGCTTTCTTCTTTCCAACCATCATATCCCTGCTTCCCACTGTCTAGCAATCCATGCTGCCATGCTGCTTGTTAGTTAGGAAGCAACTCCACTGCCAACCCTTTGGTCAAGCTTTCTCATAGTCTCTAAAGACTTAATGTTTCTTGTCTTAAGAGCATCCTTTGCTGTCCGAGGACTTAGCATGTTATATGTAGCTGTTACCCACTATATATATTGTGAACCCTCCAAGGGCAAGGGCAAGGGCAGTGACCTCTATCTGATAGTAGATTCAAAGGAATGTATGCTGAGTGAACATGTTTGATGTGGCTTCTCCAGAGACCTCCTGCCGTAATTGAGGTAGGAATGCTGTAGCAGGAACTTAACACTGTTTCATAATAGGTTTGTGAAATTAGAGCAGCTGGATTCTGAGATAAAGCTAACTTAAGGTCCTGGCAATGCTCTTCTTGTGCAGCGAGAACACTTAGCTTATGGAGAGCAATGCAAGTCAGTGTGCTTTAGACTAAAGGTGCTAAAGCTTGTTAGCAGGGTGCATCTGCAGTGGATGGAGGTGCCGAGGATTCACACAGATTAAAGAGTACACCTACTGTTCATATTACTCCCATATTTTACATAAGTAATGTCTTTAGAAAAAGATGAGATATAGATATGTTTTTACAATCTTTCTGAATGTGTTACACCTTGTGCTGTCTGTGTTTGGGGGCAGCCAATGCCACTTAGGTATAATTAGTTTGACTTTAAAAAATTTTTTATTTTATTTATTATTTATTTTGTTTTTGAGACAGGGTTTATGTAGCTCTGGCTGTCCTGAAGCTCTCTATATAGACCAGGCTAGACTTATGTCTCTGCCTCTTGAATGCTAGGATTAGAGGTATACACCACCACACCGGGCCAGTTTTTTATTTTAGCATTGACTCTTAAATAATGCTAACAAGTTGGCAGGTCTGTGATTGGGCAGCTAAGGCCAGAGAAATCTTAGTCAAGGCTCACCTGAGCTATGGATGAGTTCAAGGTCAACCTGGTGAATTCAGTGGGACCATGCTCAATAAATAAATAAACAAACAAAAAGTAAAAAGATGGGATATTGCACAGTAATAGAGTGCTTTCCTAGCTTCTAGCTATTAGATTTGATTTATAGTAAATTTGAGCCCTAATAGAAAGAGCATGTTTTCAGCAGTGAGTGGTGGTGCACACATATAGCCCTAGTTCTTCAAGTTGGAAATCAGACCATGTTACGTAGTGAGTTCCTGTCTGAAAAAACAAACAAACAAAAACCCAGCTACTACCTCCTATAACACAGTGATTTAGAGAGAAACATGGGGCAATGCAGGGTCTTTAGACGTTAGAGCAAAGCTCTAAGTGGTAATTTGTATGAGAAGGTAGTATACACCGTGCTGACCAGCTGTCACTGTACCAGCATTTTAGTTACGTGGACACAGGGTTTTGGCCCACTGGTCAGGATGCTAGGTGGCAGTGATACACACAGTAAGGAAGACTACTACTCTTGGCCCGGAAGCAAAAAGATAAAAGGGCCAGGATCCAATAGTCCCCTTTAGAAGTGTATTCCCAATGATCTATGAGGCCACTCTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTTTGTTTTTCAAACAGGGTTTCTGTGTGCAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGGAACTCAGAAATCTGCCTGCCTCTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCTTGGGGAGGCCACTCTCTTAAAGGTAGGCCCAACCCAGAGACCAAGCTTTTAGCAAACACATGAACATTCAGAGGACATTCAACATTCACTATAGGACATCTTTCATAAGATATAGAAGCTACAGAAGTGGGGGAGCGAGAGGAATAGGGGAACACATACCTATAGTCTTACCAGGAAGTAGCCATATCAAGAAGTTGGCTCACTTCTGCCTAGGCTGTTTCCCTATGTACCTTCCACTCTTGCAGCTTAGGGAAAAGTAGCAAATAGCCATCTGCCTGCTCTTCTTTTTAAGAAATTGTCTTGTAGCTGGGCGTGGTGGTGCATACCTTTGATATGCAGAAGCATGCAGATCTCTGAGTTCGAGGCCATCCTAGTATATAGAGTGAGTTCCAGGACTGCCAGGACTATATGGAGAAAAAAAAAGGGGTGGGGGTGCTGAGAAATTGCCCTTTGTTGATACAGTATTAAGCCTAAGTCTTTTTGTCTTTAG
Seq C2 exon
GAAATGGACCAAACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGATTTCCAAGAAATCAAGACAACCTTCAAGGTTGGAACAAAACCATGGATGGAAAAGCAGATGTATCTTTTGTTCTGTTTTTTGACTGTAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028719-Cmpk1:NM_025647:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: