BtaINT0039770 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019956 | CMPK1
Description
Bos taurus cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (CMPK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046044]
Coordinates
chr3:99489489-99493608:-
Coord C1 exon
chr3:99493462-99493608
Coord A exon
chr3:99489642-99493461
Coord C2 exon
chr3:99489489-99489641
Length
3820 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
AAATCTTCCTTTTTTTTTAGGAA
3' ss Score
10.42
Exon sequences
Seq C1 exon
AAATATGGCTACACACACCTTTCTGCAGGAGAACTTCTCCGTGATGAAAGGAAAAACCCAGATTCACAGTATGGTGAACTCATTGAAAAGTACATTAAAGATGGAAAGATTGTGCCAGTTGAGATAACCATCAGTTTGTTAAGGAGG
Seq A exon
GTAAGAAGTGTGAATGCCAACCAATTTAAACCAACAAGGAAATGAGAAATTAAATCTTCCCTTTCTTTGTAATGGAAAAATTAGAGTATTGAATTTCTTGCTTGTGGAGGGTGGTCATGGTATTCAAGAATGGCAGAACTGGAAATTCCACTTTCGCCTGGGAAGCAGTTGGACAGAAGGAAGCATTCTCTGCCTTGGTCTAGGATCAGCTACAACTCAACATTCATTTGTGTGCACTTGACCCTTCCCAGTGTGCAGACAGTCCATCCTCCTGTTTCTGTTTCTTCTTCCTTTTCTCCTCCTCTTCTCCCCCTCCTCCTTTCTCTTTTCTGTTTCCTTCCTTCCTTTCTTCCTTCCCCCTGTCCCTCCCTCCCACTATTGCCATTCTCTCAGTCGTGATGTTTCCTTTTCTGGTATATTCATCCCCATCTTCAGTGCGAAATGCTGAGACTAACAGCTATCAGACTAAAATAGGTCCCATCTGAAAACCAGATACCTTGGGTCTACATGACTCTCCACTAAAGATTCTCAAGATTATAATCATTAATAGGCATTTTCACGTACAAGAAATGTGAAGGAGAAATGGATAAGTGGGAACAGCAAGAAATAGTTGAAAGTTGATGGAAAAGAGATGTATGAGCTTCTGACTGGAACCAGAGAAACTTGAAGAGTGGCTCATTCACACACATTCTTACCTCTTGTCTCAGAGATTAGAGTAACCTGCTACCATTCAGACTAACAAAATCCTCTCTCCTTATCCTCTGAATGTAATGCCCTTTCTCCACTTTTATACCTAGTTGTGAAAGAGTAATCTATATTTTTTACTTTTTCCGTTTCTGCTCTTCAGCTCTTGGCACCAAGATTCTATTTCCCTTTTCACCTAAACTATTCTGATGTTACCAGTGATCTTCTCTTATCAAATCTAGGGGATATTTTCAGTCATTTTTCTTTTAACTTACTGTCTTTTTGAAACTTGTTCCTCCTTGTTCTCTGTGACACAATGTCTCTTGATTCTCTTCCTCCTTCAGTGACTGCTATTTCTTAAGTCTCCTTTAATATGTCTTCTGCAAACCATGATGCTTCTCAGGTTTCATCCTGGGTGCGCCTCTTATTTTATACATTTCTTGCTGGATGGTGTTATCCATGCCCAAGGTTTTCACTGTGCTAATGATGCCAAAATCTGTAACTCTAGCACAGATCTTTTTTTTCTGAACCAGACCTATGTTTCTAACTATTAGGCATCCATCTGACTGTCTCAACAAGTGTCTCAAAATCATCATGCCAAAGGCTGACTGTATCATCTAAAATGTGATCACCCTTTATTTCGTATCCTGGTTAATACCATCTACCCAGCTGTGCAGGCCAGCAATCTGGGATCCATCCTTTATTTCTACCTTTTCCTCACTTTCCCAAATCTGTTCAGTGAGTAGATCCTTTCAATTATCTTTCTCTTTACCCTCTTCTATTTAGCATTTTTTCTTTATTGCTACTATCATCTTAATTCAAATCTTCTCTTTTTCTTACTTGGACTATCACTAGAGCCTTATCATTAGTCTTTTGCCCTTGATCCATCTTTGTCCCTTTATTCATCCTTTATGGTGTGGTCAGAGGTTTTTTTTTTTAAAGGTGATGGGAACATGTTCTCCTACTGCTTAAAATCTCTCAGTGGTCCTGTATTGTTTGCAGAATAAAAACCAAAAGCTTAGTGTGGTACAAGTTCTTCATTAATTTTGGCCCTACCCACTTTCTAGTCTAGCTTGCTTCTTGGAAGGAAGGCTATGACAAATCTAGACACCGTATTAAAAAGCAAAGACATCACTTTGCCAACATAGGTCCATATAGTCAAAGCTATGGTTTTTCCAGTAATCATATATGGATGTGAGAGTTGGACCATAAAGAAGGCTGAACACGAAAGAATTGATGCTTTCAAATTGTGATGCTGGAGAAGACTCTTTGAGAGTCCCTTGGACTGCAAGGAGATCAAACCAGTCAATCCTAAGGGAAATCAACTCTGAATACTCATTGTAAGAACTGATGCTGAAGCTGAAACTCCAATAGTCTGGCCACATGATGCAAACAGTCGACTCGTTGGAAAAGACCCTGATGCTGGAAAAGATTGAAGGCAAAAGGAGAAGAGGGCAGCAGAGGAAGAGATGGTTGGATGGCATCACCAGTTCAGTGGACATGAACTTGGGAAAACTTGAAATAGTGAGGGAGAGGGAGGCCTGGTGTGCTACAGGCCATGGGGTCTCATGGAGTCGACATGATTTAGTGACTGAAAAAACAACTTTCTAGTCATATCTCCTGCCACTCTCTACATGCATCCTAAGGTTCACCTCTACCAGCTTATTTCAGATTCATCAAAGCTGTTATGCTTCCTCATTTCTGAGCCTTTAACATCCAGTTGACACATTCTGGAGTACCTTGATCCCTGCCTGCCTGCCATTTTACTATTCAGAATTCAGCTTCACTGCCATCACTTCAGTAAAACTCTTTCTGGTGGTTCCACAGGTAGTTTGTGCTGGCTTCTTGGTTTTATCACAGCATCCTTGCATACCTCAGTATAGAACTTAGCACACTGAGTTACACATATTTGTTAACCACTGGACTATAAGCCTTCCAGAGGCCATGACCTTGCTCTTCATGTTCCGTGATGGTTAGACCTTGAATGAGTGTATGTTGAGTGAGTAGAGTATCAGTGTGCCTCTTCAGATATCTTCTACTACCATAATTGGGATAGAAATGCTATAGCAGGGACACAAAAGCATTCTGTGAAAGTTTTGTGAATATTGGAGATGCTAGATACTAGGATAAAGCCAACCCCCAGATAAAGGAATTTACGTCCTGACAGCCATTGTTCTTCTTGAGGAACCAGGATTGTTTGAGCACTGAGGGAACTGGTTGTTGGTTTGCTTTAGAATAGAAACTCCTCTGGAGTTTGCCAAAGTCATACATCTGTGCTTATCCCATGGTGGTTGATAGTGAAAAGAATTAGAGACTCAAGATCTGTATCTCCCATTCACAGATTTCCACATTCTACCTGAATTCAGACTTGGGAAGAGGATGGTGAAATAATTCTTGCTATCTTTCTGAATGTATTGTTTCTCTTGCTACCTGTGTTTTGGGGTAGCCAGTGGCATTTAGGTTTATTTATTTATTTTTTAATATTTCTTTATTTTACTGCACTAGGTCTTAGTTGCAGCATGTGGGATCTAGTTCCCTGACCAGGGATCAAACCAGGGCCCCCTGCATTGGGAGCTCGGAGTCCTTAGCCCCTGGATCACCAGGGAAGTCCGGCATTTAGGTTTAAATTAGCTTCAGTTATGAAAAAAAAAGTATTTACTCCTACACTAATAGCATTGCTAACAGTTTATATGTCCAAAGTTTTTTGCAGTTGTACTTGAATTACTGCAGAGAATCTGAGTACCTATAGAAGCAGTGTACTCCCTACCATAGCTAAATGACTTGGGAAGAGGAAAAGGAAAGTAAGATATGGGTCTCTAGTAGCTGGAGCAAGAATATTGATTAATGCTTATTTTTCTTTTCTTGCTGTTAATAATTTTATGAAAATAATATATGCTTACTATAGAAAATTTTTAAACTATAGAAAAAAAATTGTGTGTGTATGTGTATAAAATGGGAGAGGGATACATATCCATAACTCTTGTCGGCTGGAGGCAAACATGTTATTTCCTTTAAATTTTTTTTTCCTGTGTACTCTCCACATTTACGATATAAAGAATAATAATAAAACATACTCTGCTTAAGAAATTGCATTTTGTTAATGTAGCATTGAATTCAAATCTTCCTTTTTTTTTAG
Seq C2 exon
GAAATGGATCAGACAATGGCAGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAGGACAACCTTCAAGGCTGGAATAAGACCATGGATGGGAAAGCTGATGTATCTTTTGTTTTATTTTTTGACTGTAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019956:ENSBTAT00000026582:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]