HsaINT1007897 @ hg38
Intron Retention
Gene
ENSG00000162368 | CMPK1
Description
cytidine/uridine monophosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18170]
Coordinates
chr1:47368469-47373107:+
Coord C1 exon
chr1:47368469-47368615
Coord A exon
chr1:47368616-47372954
Coord C2 exon
chr1:47372955-47373107
Length
4339 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
AAATCTTCTTTTTCCTTTAGGAA
3' ss Score
10.41
Exon sequences
Seq C1 exon
AAATATGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTGATGAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
Seq A exon
GTAAGGAGTGTGAATGCCAACCAGTTCAAACCAGCGAGGAAAGAAGAAATTAAATTCACCTTTTGGCCAGGCAGTTGCTCATGCTTGTGATCCCAGCATTTTGGGAAGCCAAAGCAAGAGGATCACTTGAGGCCAGGAATTCAAGACCAGCCTGGACAACCTAGTGAAACCCCATCTCTACAAAAAAATTTTTTAAAAAGCCATGCGTGGTGGCATATGCCTGTAGTCCCAGCTGCTTGTGAGACAGAGGCAGAAGGATTGCTTGACCCCAGAAGTTCAAGTCCAGCCTGGGAAACATAGTGAGACCTCCTCTCAAAAATAAATAAATAAACAACAATAATAATAAAAATAAATCCACCTTTCATATGTGTAATGAAAAATATCAAAGATTTTTTGTTTTGTTTTGTTTTGAGACAGTGTCTTTGTCACCCACGCTGGTGTGCAGTGTCCTGATCACAGCTTGCTGCAGCCTCAACCTTCCAGGCTTAAGCCATCTTCCCACCTCAGCCTCCTGAATAGCTGGGACTACAGGTGCATGCCACCACACCTAGCTAATTTTTTTCTATTTTTTGTGGAGACAGGGTCTCACTATGTTGTGTAGGCTAGGCTGGAACTCCTGGGCTCAAGTGATCCTCTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGAGAGCCACCACACCTAGCTCAGAGTATTGAATTTCTTGCTTGTGGAAGGTGGTTATGCTTGAGAATGGCAGAACTGGAAACTTTGCTTTCACCTGGGAAGAAAGCGGACAGTGGCAAGGATTCTCTGCTTTGATTTAGGATCACCTATAGCTCAACTTAACATCCATTTATGTGCACTTGGTCCTTTCTTCCCAACATTCAGACAGTTATTCTCTTCCATTTCTGTTTCATCTTTTTTCCTCCCTCTCCTGCTCCCTTTCCTTTTTTCTTTTTTGCTTGCTTTCTTTTTTTTTTGAGATAGAGTCTCGCTCTGTCGCCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGAGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAGATAGGGTTTCACCATGTTGGCCATGATGGTCTCGATCTCTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTAGAGGTGTGAGCCACCGTGCCCGGCCCCCAATTTTTTTTTTTTTAAATAAACCTCTTTCTTTCTTCTTTCTCTCTCTTTTTTTTTTTTTTTTTGGCGGGGAGACGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGAACTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGAGTACAGGCGCCCGCCATCAAGCCTGGATAATTTTTTGTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCCATCTCCTGACCTCACGATCCACCCGCTTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCATGCCCAGCCCTTTCTCTGTTTTTTAACCCACGTCCCTCTCATCATTGATGTTCGCTCAGCCATGGTGTCTACTTTTCTGGTGTATCACCATCTTCAATGTGAAATGCTAAGACTTAAGAACTTTTAAAACTAAAATATGTCACATCTGAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGGGGATCACTTGAGGTCAGGAGTTCGAGACCAGTCTGGCCAACATGGTGAAACCCCGTCTCTACCAAAAAATATAAAAAATTAGCCAAGTGTGGTGGCACACACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGAAGAATCGCATGAACCTGGGAGGCAGAGGTTTTGGTGAGCCAAGATCATGCTACTGCACTCCAGGTTGGGTGACAGAGTGAAACTCTGTTTCTTAAAAAAAAAAAAATGTCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGAACTTTAAGAGGCCAAGGTGGGTGAATTACGAGGTCAGGAGTTCAAGACCAACATGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAATTAGTCGGCCGTGGTGGCAGGCACCTGTAATCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCAAGGAGGCAGAGGCGGAGGTTGCAGTGAGCCAGGATCGCACCATTGTACTCCAGCCTGGGCAACAGGGTGAGATTCCGCCTCAAAAAATAAATAAATAAATAAATAAATGTCACATCTGAAAAACAGACACCCTGTATTTACTAGGTAACTCTTCATTCTAGATTCCTAGAACTATAATCATTAACAGGTATTTTCACATAGAAGAACAGTGAGGGAGAAAAAGAAATGCAATATTGGGAACAACAAGAAATGGCTGAAGCCTGATGGAAAAGAGCTATGTAAGCATCTGGTTGGAACTAAAGACATTGGGGATGAAAAGTGGCTTGTACACACATTCTTACCTCTTGTCTCAGAGGTTGGAGTAACCTGCTTCCATTCCAAAATAAACAAATCTCTCTCCCTATTCACTCTTTCTAATGTCCTTTCTCTGCTCTATAAAGCAGAGAAAGTATTATGAAAGAGCATATGGTTTTTACTTTTTCACTCTCTACTTTTCCACTCTCTACTTTTCAACCCTTTGCAGTCAGATTCTGTTTCCATCTCCATTGCAGCTGCTCTTGCATGTTACCAATGATGATCTCTATCAAATAATACTTTTGTCATTATTTTTCTTGTAGTATTTAACTTTAATCAGTCTGTTTGAAAATCATTCCTCCTTTGTTCTTTATGACAGCGTCTCTTTTTCTTCTCTCCCTACTGAGTGACTGCTATTTCTCTATCCTCTTTAATAGTTATTCTTTTGCAAGTTTCCAAAACCATGATGCTTCTCAGGGTTTTATACTTGGTCTTATTCAGCTCTCATTTCATATGTTTCTTTCTGGATGGTTTTAGCCATACCCAAAGCTTTCACTATGCTCATGCTGCTAAAGTCTATAGCTCTAAAACAAAATGTTTGTTTTGAATTCCAGACATATATTTTTAACTACCTAACTACTAGGCCTTTATTTGAATGTCTCACAAGTGTCTCAAAATCAACATGTCAGAGGCTGAGTGTATTGTCTAAAATGTGATCTTCCTTTACTTCCTGTCTTGGTTAATGGTTCTGCCATCTACCTAGCTACTCAAGGCATAAATCTGGGAATCATCCTATATTCTCCTGCCTCTTCCTCACTTTCCCAAATCCATTCAGTGAGCATATCTTTCCAGTTATTTTTCTTTTAATCCTCTTCTGTTAGTCTCTTCTCTGTCATCACCTTAGTTCACATCCTCTTTTTTCCTATTTTTTTTTTTTTTTGAGACAGAGTCTCTCACTCTGTCCGCCAGGCTGGAGTGCTGTGGCACGATCTCGGCTTACTGAAACCTCCACCTCCTGGGTTCAAGCATTTCTCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGTGCCAGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCGGGCTGGTTCTTTTGTTGCCTTTGTTTTGGGGCAGCCAGTGACATTTGGGTTTAATTAGCTTCCGTTAAAAAGTATTTTATCCTACATTAATAATTAATGCTAATGGTCTTTTATATTTGTCCAAAGCTTTGTGTTGTTGGACTTGAATTATATGAATAGCAGAGTTGAGCACCTGTAGAAGTAATATACTTTCCACTATAGCAAAACGACTTGGGAAGAGCAAAGGGAATAAAGAGAGGGTCTCCAGTTGCTGGAGCAAAGATAATGGTTAATGGTTATTTTCCTCTTATTGCCGCTCTTATTGTTTATTTATAACTTTGTGAATGTGTATGTGAAAGTAACATATACTTAACTGTAGAAAATTTGGAAACCACAGAAAAAAATTGTGTGTATAAAATGAGGTGGTTTTGAGAGGGGCATATACCCATAACCACACCAACTTGAGGCAACCATCTTAATACATTGATAGATTTCCTTCTAGTCTTTTTTCTTTCTTTCTTTTTTTCTTTTCTTTTTTTTTTTTGCTATGTACCCTCCACCCTTTACTTATGGTTTAAATAATAATAATAAAACACCCATGTATACACTACCATGCTTGAGAAATTTCATTTTGTTAATGTTGTATTGAACCTAAATCTTCTTTTTCCTTTAG
Seq C2 exon
GAAATGGATCAGACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162368:ENST00000371873:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(39.7=100)
A:
NA
C2:
PF0040617=ADK=PD(17.4=7.8),PF0040617=ADK=PU(51.5=98.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains