RnoINT0037802 @ rn6
Intron Retention
Gene
ENSRNOG00000007775 | Cmpk1
Description
cytidine/uridine monophosphate kinase 1 [Source:RGD Symbol;Acc:1310116]
Coordinates
chr5:133763515-133766389:-
Coord C1 exon
chr5:133766243-133766389
Coord A exon
chr5:133763668-133766242
Coord C2 exon
chr5:133763515-133763667
Length
2575 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTAAGTCTTTCTGCTTTTAGGAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
AAATATGGCTACACACACCTTTCTGCAGGAGAGCTTCTTCGTGATGAAAGGAAGAATCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
Seq A exon
GTAAGAAGCATAAATACCAACTTGTTCAAACTACCAGGGACATAAGAAGCTAAATTCAACTTCATTTGAATAATGAGAAACCAGACTATTAAATTTCTTGATTATGGAAGGTAGTGTGGTCTTTGAAAATGGCAGTGTAGGAAAGTGCTTTCACTGTGAAGAAATTGACAGTAGCCAGGATGCTCTGCCTTGGTCTAAGGCCAGCTATAGCCCAGCATAACGTACACATAGGTATATGTTGTTTTGTTTCTGAAACAGCCTCATGTATCCCAGGCTGGCCTGGAAGTTACCTAGTCAGGGATCTTCCTGCATCTGCCTCTTAGGATTCCAGGACCCATCCTTTCCAGCATGCAACAGTTCTCTCCCGTTGTGGTTATTCTCCCTTCCACTGCTCTGTCCTCCCTTCTCTTGAATGTGTTCTCTCCTGCTGTGATTCCCATTCACGGTTGTTCTCATTGTTTCTGTTTTAAAGTCTCTTTATTTTCCTCATGAATGCATTGCTATTTTCAATGTGAGATTGAAAATACACACACTAACACACACACACACACACACACACACACACACTCACTCACTCACACACACCCTACCTTGGTAGGTAGTGCTTTCCTGCAGGTCCCTAGGACTAATCAGTAACAGGTATTTTGACATAACAAAACTAGTGAAACAGAATTGCATTGTTAGGAAAAGGAAGCAGTAAATGGATCTCAATATTGAATCTTGGGTGTAACTGGAGACACGTGGGTTGTAGAATGACTCTTACACAGTCTGCCAAGGATTTAGACAGATTAAAGATTACATCTACTGTTCATATTACTCCCATATTCTGTATAAGTTCTAGCTTTGGAAAAAGATGATGAGATATGTTTTCGCAATATTTCTGAATGTGTCGCACTTGTGCTGTCTGTGTTCGGAGGTAGCCAGTGCCATTTAGGTATGATTAACTTGAGATTTTTATAATTTTATCTTATTTTGCTTTTGAGACAAGCTTTATATAGCTCTGGCTGTCCTGTAGCTCTCTGTGTAGACCAGGCCAGTCTCAGACTTAGAGATTTGTCTATCTCTGTCTCCTAGTTTTTTATTTTGGTATTGAGTCCTAATAGTGCTAACAAGTTGGCAGGTCTGGTAATACAGGCTTGGGAAGCTAAGGTCAGAGGAATCTTAGTCAAGACTGACCTGAGCTATGGCTGAGTTCAAGGCTAACCTGGAGAATTCAGTGGGATCCTGCTCAATAAATAAATAAACAAACAAAAAGTAAAAAGACTGGGATGTTGCACAGTAATAGAGTGCTTCCCCAGCTTGCAGCTATTAGGTTTGAATTATGGTAAATTTGAGCCCCGATAGAAGGAGCGTGTTTTCAGCAGTGAGCAGTCGTGCACACACATAGCCCTAGTTCTTCAAGTTGGAAACCAGACCATGTTACATAGTGAGTCCCTGTCTGAAAAACAAAAAACCAGAACTGCTTCCTCCAATAGCACAGTGATTAGAGAGGGAGAGATGTGAGCGGCACAGATGTTACAGCAAAGCTCTGAGGTTAGCTTGTATGAGAAGGCGTATGCGCTGTGCTGATGAGCTGTCACTGTCCTATCATCTTATTTCAGTAGACATGGTTGTGGCCCACTGGTAGGGATGCTAGGTGGCAGTGATACTCACAGTAAAGAAGACTACCTCTTGGCCAGGAAGCAAAAAGATAAAAGGGCCAGGATTTTGTGCAAGTGCACTCTTATGGTGTTTGAACAAAACTGCCTATCTCGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCTGTCCCCAGCTCCGGAAAAAACAAAAAACAAACAAACAAAAAAAAAAACTGCCTATCTCCATCATAAAGTGACACTTGCTATAAGGACAAGGACAGAACAGAAACATTACAGAGTTAACACCATAAAGCCTATCTATAAAAACTAAAATGACTACAATGCCATTAGGCAATATGCTCTTCTGAGATAAGTGGTGCACATGGCCTTGCACTTAAGCTAAGGCACAGAAGACAGGGGGGGGAGGCACTGACACTGCTTCTGTTTAGACATGTTGATCCCTAGTCGTCTTTAGAAGTGTATTTCAGTGAGCAATGAGGCCACTCTCTTGAAGGTAGGCCCACCCAGAGACCAAGCTTTTAACAAACACATGAATCTTCAGAGGATATTCAGTATGCACACTACAGGATATGTTTCATAAGATATGGAAACTGCAGAAGTGGGGGAACAAGAAGAATAGGGGAACACATATCTACAGTCTCTCCAGGAAGCAGCCATGTCAAGAAGTTGGTCATTTCTGCCTAGGCTGTTTCCCTGTGTACCGTCCATGCCTGTGGCTTAGGGGAAAGTAGCAAATAGCCACCTGCCTGCTCTTCTGCCTAAGAAATTGTCTTTTAGCTGGGCGTGGTGGTGTGTGCCTTTGATACGCAGAAGCATGGTGTACAGAGTGAGTTCCAGGACTGCTAGGACTACATAGAGAGAAAAATAAAGGGAAAGAAATTGCCCTTTGGTGATGCAGTATTGAGCCTAAGTCTTTCTGCTTTTAG
Seq C2 exon
GAAATGGACCAAACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGCTTTCCAAGAAATCAAGACAACCTTCAGGGTTGGAACAAGACCATGGATGGGAAAGCAGATGTATCTTTTGTTCTGTTTTTTGACTGTAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007775:ENSRNOT00000010318:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]