DreINT0048060 @ danRer10
Intron Retention
Gene
ENSDARG00000019924 | cmpk
Description
cytidylate kinase [Source:ZFIN;Acc:ZDB-GENE-040426-2113]
Coordinates
chr2:10269492-10270259:+
Coord C1 exon
chr2:10269492-10269638
Coord A exon
chr2:10269639-10270106
Coord C2 exon
chr2:10270107-10270259
Length
468 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTT
5' ss Score
1.96
3' ss Seq
ATGTTTTCTGTATTTGGCAGGCA
3' ss Score
8.07
Exon sequences
Seq C1 exon
AACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAG
Seq A exon
GTGGTTACATCCCTTTGTTCTGTTTTACAAGCCATTTCAGTTCATGTTAGCCTTTAGCTTTTTGAAAAAGAATGAACTTAAAAGGATAGTTCACCCAAAAATCAACACTGCCTCATCATTTACTCTCTGCTGGTGGAGAGCACTCATTACTATTGAAGTCAATGGGTGCCAGCTACTAGCATTTTTAAAAAATCTTCCTTTGTGTTCAGCAGACTAAAGTAACTCATAAAGGTTCAGAACGAGTGAAGGATGAGTAAATTATTGCAGTATTTTCATTACTGGGTAAACTACCCCTTTAAAAGCAAACATGAGCAGTTTTAATACAAGGAGGATAGTTCAAAGCCTGTTTACTGTGTGGTCAATTTGTAATTCTGATTTACTGCGCTTTTGTGTTGAGTTTTATCTTATCCAAAAAATAAATACTTTTTTAAATGTGTCTTTACTTAAAATGTTTTCTGTATTTGGCAG
Seq C2 exon
GCAATGGAAGAGACTATGAAAGCTGATGAGAAGAAGTTCCGCTTTCTTATCGATGGTTTCCCACGTAACCAAGACAACCTGCAGGGCTGGAATACTGAGATGGATGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019924:ENSDART00000014088:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(29.3=100)
A:
NA
C2:
PF0040617=ADK=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTACACTCACCTGTCCGC
R:
CTCATTGCTGCAGTCAAAGAA
Band lengths:
295-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]