HsaINT0047425 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46400541-46400786:+
Coord C1 exon
chr11:46400541-46400661
Coord A exon
chr11:46400662-46400752
Coord C2 exon
chr11:46400753-46400786
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CACCACCTCCCCTTCTCCAGCCC
3' ss Score
6.98
Exon sequences
Seq C1 exon
CTCCAGGAGCTGCACCGAGCTGGGGGCGACCTCATGCACCGAGACGAGCAGAGTCGCACGCTCCTGCACCACGCAGTCAGCACTGGCAGCAAGGATGTGGTCCGCTACCTGCTGGACCACG
Seq A exon
GTGAGCCGGGCAGTGGAGCCCAGGGCCTGGGGCCAAGGTGGGAGGAGGAGGGGCTGCCAGGCCTCTCTGACCACCACCTCCCCTTCTCCAG
Seq C2 exon
CCCCCCCAGAGATCCTTGATGCGGTGGAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(72.5=90.2)
A:
NA
C2:
PF138571=Ank_5=FE(21.6=100),PF127962=Ank_2=PU(12.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCTGCACCGAG
R:
TTTTCCTCCACCGCATCAAGG
Band lengths:
155-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)